LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g04698	ATGATTTTCATTTTTATTAAAAAAAAGTTTCGTACTACGAATGAACCACATCACACGCATGGGGATTCATCTTTATCTTTAGCTCCGTTTGGAACCCTAATTTCCAGAATTTCTCAAATATCACAATCCCTTTCCCTCCGTAATTTCTCAGGTTTTGAGATTATTTGTGAAATGGCATCAGTGTCTACTCAACCACAGTTCCGGTACACGCAGCCACCGTCGAAGGTGCTTCATTTGAGAAACTTGCCGTGGGAGTGTATAGAAGAGGAGCTGATCGAACTCGGGAAGCCGTTTGGTAAAGTTGTCAACACAAAGTGTAATGTTGGAGCGAATCGAAATCAAGCTTTTATTGAATTTGCAGATATAAATCAAGCGATTGCGATGATATCGTATTATGCATCATCGTCGGAGCCGGCTCAAGTACGAGGGAAGACTGTGTATTTGCAGTATTCCAATAGACAAGAAATAGTGAATAATAAAACTGCTGCAGATGTTGCTGGGAATGTACTGTTGGTAACAATTGAGGGTGAAGATGCGCGTCTTGTGAGCATAGATGTTTTGCATTTGGTTTTTTCGGCCTTTGGATTTGTGCATAAGATTACTACTTTTGAGAAAACAGCTGGATTCCAGGCACTGGTGCAGTTCTCAGATGCTGACACTGCCACTTCTGCCAAGGATGCTTTGGACGGAAGAAGCATACCTAGCTACTTACTCTCTGGGCATGTGGGACCTTGTACCCTTAAGATCACATATTCTGGACATTCAGACTTAAGTGTTAAGTTTCAAAGTCACAGAAGCAGAGACTACACCAATCCTTACCTTCCTGTTGCTCAATCAGCTATGGAGGGAAATGGACAGTCTGTGATGGGTTTGGATGGAAAGAGACTTGAGGCTGAGAGTAATGTTCTTCTTGCATCAATTGAGAACATGCAATATGCTGTAACATTGGATGTCTTACACACGGTTTTCTCTACTTTTGGACCCATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTGCAGGCTCTGGTTCAATACCCAGATGTTCAAACGGCCATTGTGGCCAAGGAAGCCTTGGAAGGACACTGCATTTATGATGGGGGATTTTGTAAGCTTCACCTCTCCTATTCACGTCATACTGATTTGAGTATAAAGGTCAATAATGACAGAAGCAGAGACTATACCATGCCTACTGCTCCGCCACCAGTCATGAACGCCCAGCCCTCAGTTTCAGGGCAACAACAAGCTCCCATGACTGGTCCTCCTGCTCAACACTACAATACTGCTCAGTACGCTCCAACGAACAATCAGAATTTTATGCCTCAATCTCAGGCTGGATGGGGAGCAGCTCCACCAGCACCACACGCAATGCAGCGAATGCATCATAATCCTTACATGCCACCCGGTACGATGCCACCACAAGCTGGCCCTGGAATGATGCAGCAGTATCCTGGTCACTATCAGTAG	1470	0.4408	MIFIFIKKKFRTTNEPHHTHGDSSLSLAPFGTLISRISQISQSLSLRNFSGFEIICEMASVSTQPQFRYTQPPSKVLHLRNLPWECIEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADINQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVAGNVLLVTIEGEDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDADTATSAKDALDGRSIPSYLLSGHVGPCTLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGNGQSVMGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGGLQALVQYPDVQTAIVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTMPTAPPPVMNAQPSVSGQQQAPMTGPPAQHYNTAQYAPTNNQNFMPQSQAGWGAAPPAPHAMQRMHHNPYMPPGTMPPQAGPGMMQQYPGHYQ	489

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g04698	489	FunFam	Polypyrimidine tract-binding protein-like 2	299	404	-	-
	Vivi4g04698	489	Pfam	RRM-like domain	299	378	IPR021790	-
	Vivi4g04698	489	SMART	rrm1_1	304	374	IPR000504	GO:0003723
	Vivi4g04698	489	SMART	rrm1_1	76	149	IPR000504	GO:0003723
	Vivi4g04698	489	Gene3D	-	169	279	IPR012677	-
	Vivi4g04698	489	Gene3D	-	299	402	IPR012677	-
	Vivi4g04698	489	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	165	233	-	-
	Vivi4g04698	489	SUPERFAMILY	RNA-binding domain, RBD	64	157	IPR035979	GO:0003676
	Vivi4g04698	489	MobiDBLite	consensus disorder prediction	468	489	-	-
	Vivi4g04698	489	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	79	130	IPR000504	GO:0003723
	Vivi4g04698	489	FunFam	Polypyrimidine tract-binding protein homolog 2	62	168	-	-
	Vivi4g04698	489	Gene3D	-	62	168	IPR012677	-
	Vivi4g04698	489	PANTHER	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	63	444	-	-
	Vivi4g04698	489	CDD	RRM1_PTBPH1_PTBPH2	73	153	IPR034792	-
	Vivi4g04698	489	SUPERFAMILY	RNA-binding domain, RBD	307	400	IPR035979	GO:0003676
	Vivi4g04698	489	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	75	153	IPR000504	GO:0003723
	Vivi4g04698	489	CDD	RRM3_PTBPH1_PTBPH2	300	396	IPR034794	-
	Vivi4g04698	489	SUPERFAMILY	RNA-binding domain, RBD	182	275	IPR035979	GO:0003676
	Vivi4g04698	489	CDD	RRM2_PTBPH1_PTBPH2	167	261	IPR034793	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g04698	Vivi-Chr4	175817653	175825204	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g04698	K14948		-	gmx:100810102	728.013

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi4g04698	4	175817653	175825204	Vivi4g04698	4	175817653	175825204	ECH