Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04643 ATGCATATTCAAACTTGTCACTCCACTAAAACACTTCCTTTAACATGGAACATTCCAAAAACCATGAACCAACGAACACATCGCCACCTCCTACCACCACCAAAATCCACCGCCGCCGCCGCATCACCGTCGTTAAAACTATCCAAAACCCACTCAATGCCACCGGAAAAACTCGAAATTTTCAAGTCACTTGAAACCTGGGCTTCTGAGTCTGTACTACCACTCTTAAAGCCCGTGGAACAATGCTGGCAGCCTCAGAGCTTTCTCCCTGATCCTTCTTTACCGTTCAATGAATTCACCGATAAGGTGAAAGCTCTTCGGGATCGAACCAAAGAGCTTCCGGATGAGTATTTTGTTGTGCTGGTTGGTGATATGGTGACGGAAGACGCGCTTCCGACTTACCAGAGTATGATTAATGGTCTTGATGGAGTTGGTGATGAGAGTGGCGCTAGTCCAAGCCCGTGGGCCGTGTGGACACGGGCTTGGACTGCTGAAGAAAATAGGCATGGAGATTTGCTTAGGACTTACTTGTATCTTTCTGGAAGGGTTGATATGGAGAAGATTGAGAAAACTGTTCAGTATCTTATTGGAGCTGGCATGGACCCAGGAACAGAAAACAACCCATATTTGGGATTTGTATACACATCATTCCAAGAGCGAGCCACATTTGTATCACATGGAAACACAGCTCGCTTAGCGAAAGAAGGAGGCGATCCAGTGCTTGCGCGCATATGTGGTACCATCGCAGCGGACGAGAAGCGTCACGAGAATGCATACTCAAAAATTGTGGAGAAGCTTCTTGAAGTTGACCCCTCAGGAGCAATGGTAGCCATTGGTGATATGATGGAGAAAAAGATCACAATGCCTGCACACCTTATGTATGATGGACAAGATCCTAAGCTATTTGAGCATTTTGCAGCCGTAGCACAACGCACTGGCGTTTACACGGCTAACGATTATGCTGATATCTTGGAGTTTTTAGTCGAACGGTGGAGATTGGAGAAGTTGGAGGGACTGTCGAGCGAAGGTAAAAAGGTACAAGATTATGTTTGTGGATTAGCGCCGAGGATTAGGAGGCTGCAAGAGCGTGCTGATGCGCGGGCACGGAAGATGAAGCCACAGGGTGTCAAGTTTAGTTGGGTTTTCAATAATGAAGTAATTTTGTAA 1167 0.4653 MHIQTCHSTKTLPLTWNIPKTMNQRTHRHLLPPPKSTAAAASPSLKLSKTHSMPPEKLEIFKSLETWASESVLPLLKPVEQCWQPQSFLPDPSLPFNEFTDKVKALRDRTKELPDEYFVVLVGDMVTEDALPTYQSMINGLDGVGDESGASPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMEKIEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAADEKRHENAYSKIVEKLLEVDPSGAMVAIGDMMEKKITMPAHLMYDGQDPKLFEHFAAVAQRTGVYTANDYADILEFLVERWRLEKLEGLSSEGKKVQDYVCGLAPRIRRLQERADARARKMKPQGVKFSWVFNNEVIL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04643 388 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 40 388 - -
Vivi4g04643 388 Pfam Fatty acid desaturase 56 382 IPR005067 GO:0006631|GO:0045300
Vivi4g04643 388 Gene3D Ribonucleotide Reductase, subunit A 41 388 IPR012348 GO:0016491
Vivi4g04643 388 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 35 386 IPR005067 GO:0006631|GO:0045300
Vivi4g04643 388 PIRSF Dlt9_acylACP_des 7 388 IPR005067 GO:0006631|GO:0045300
Vivi4g04643 388 MobiDBLite consensus disorder prediction 26 51 - -
Vivi4g04643 388 CDD Acyl_ACP_Desat 56 364 IPR005067 GO:0006631|GO:0045300
Vivi4g04643 388 SUPERFAMILY Ferritin-like 45 387 IPR009078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04643 Vivi-Chr4 174546788 174548476 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04643 33 386 Acyl Lipid Metabolism Gene Families AT1G43800 76.536 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04643 K03921 - gmx:100037478 631.713