Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04621 ATGGTGAAGGAAACAGAGTATTACGATATCCTCGGAGTCTCTCCTTCTGCTTCCGATGATCAAATTCGCAAGGCTTATTATCAAAAGGCAAAGCAAGTTCATCCTGATAGAAACCAAAACGATCCTAATGCTGCACACAAATTCCAGATTTTGGGCGAAGCGTATCAGGTTTTGAGTGATCCGGTACAGAGGAAGGGGTATGATCAAAATGGAAAGCATTCTGTATCTAGAGAAACTATGCTTGACCCCATGGCCGTCTTCGCCCTGCTTTTTGGAAGTGAATTGTTTGAAGACTACGTTGGGCATCTAGCTGTTGCATCAATGGCTTCTTCTGAACTAGCTGATGAAAGTGAGGATTTGCAGGAAAAGCTTAAGGCTGTCCAGAAAGAAAGGGAAGAAAAGCTAGCAAGATTTTTGAAAGATTATCTCAGCCAATATGTCCGCGGTGACCAAAAAGGTTTCTTGCAGCGCGCTGAATCTGAAGCACAACGGCTTTCTCATGCAGCTTTTGGAGTTGACATGTTACATACCATAGGCTATATATACTCAAGACAAGCAGCTCAAGAACTAGGGAAAAAGGCCCTTTATCTTGGAGTGCCATTTCTGGCTGAATGGGTTCGCAATAAAGGACACTTTTGGAAATCACAGTTAACAGCTGCTAAAGGTGCTTTTCAGTTGCTCCAACTTCAAGAAGAACTCAGCAGGCAATTTAAAACGGATGGTAGTTGCTCTGAGAATGTTGACTCCCATATTCGTCTTAATAAGGATACTTTGTTGAATTCACTGTGGAAGTTAAATGTAGTGGACATAGAAGTAACCCTTGCACACGTGTGTCAAATGGTGCTAAAGGAAAATAATGTTCGGAAAGAGGAACTTAAAGTTCGAGCTACCGCTCTTAAAATTCTTGGGAAGATATTTCAGGAAAAGAATGCAAAAGGAGAAACACTGAAGAAGAAACACGCTGTTGATTCTGATGACGAAGGAAGCAGCTCTGATTCATCAGACGATGAATCATCACATAGAGCACTTACCTATCGAACTCCTTTTTTCACTCAGGGTATTGGTAGGCTCTTCAAATGTCTTTGTAATCCAGCATTTGATGTGGATGATGAAGAGATAGTTTACAAAAGCAAATAA 1137 0.4125 MVKETEYYDILGVSPSASDDQIRKAYYQKAKQVHPDRNQNDPNAAHKFQILGEAYQVLSDPVQRKGYDQNGKHSVSRETMLDPMAVFALLFGSELFEDYVGHLAVASMASSELADESEDLQEKLKAVQKEREEKLARFLKDYLSQYVRGDQKGFLQRAESEAQRLSHAAFGVDMLHTIGYIYSRQAAQELGKKALYLGVPFLAEWVRNKGHFWKSQLTAAKGAFQLLQLQEELSRQFKTDGSCSENVDSHIRLNKDTLLNSLWKLNVVDIEVTLAHVCQMVLKENNVRKEELKVRATALKILGKIFQEKNAKGETLKKKHAVDSDDEGSSSDSSDDESSHRALTYRTPFFTQGIGRLFKCLCNPAFDVDDEEIVYKSK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04621 378 SMART dnaj_3 5 63 IPR001623 -
Vivi4g04621 378 Gene3D DnaJ domain 1 85 IPR036869 -
Vivi4g04621 378 Pfam DnaJ domain 6 68 IPR001623 -
Vivi4g04621 378 CDD DnaJ 6 60 IPR001623 -
Vivi4g04621 378 Coils Coil 110 137 - -
Vivi4g04621 378 MobiDBLite consensus disorder prediction 316 339 - -
Vivi4g04621 378 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Vivi4g04621 378 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 331 - -
Vivi4g04621 378 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vivi4g04621 378 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vivi4g04621 378 PRINTS DnaJ domain signature 63 82 IPR001623 -
Vivi4g04621 378 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vivi4g04621 378 Pfam X-domain of DnaJ-containing 128 314 IPR026894 -
Vivi4g04621 378 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Vivi4g04621 378 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04621 Vivi-Chr4 174182411 174188564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04621 7 81 Miscellaneous Gene Families AT1G16680 38.961 1.88e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04621 - - gmx:100793811 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04621 4 174182411 174188564 Vivi4g04621 4 174182411 174188564 ECH