Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04589 ATGGATTTCAAAACCACCAAAGAATCAAAACCATTTCTCTCACTTTTTCTCTTTCTGCTCTTTTCTTCCATTTTCCCTCTCTCTTTCTCAGCTGCTTCCAATAAACCCCTCAACTCCGATAAGCTCCATCGCCTCCGTTCCTCCGCCGTTTTCCGTCTTCACGGAAATGTTTACCCCCTTGGGTATTACACAGTGTCTCTCAATATTGGTTATCCTCCAAAGCTTTATGACCTTGATATTGACTCTGGTAGTGACCTCACCTGGGTTCAGTGTGATGCACCATGCAATGGTTGCACCAAGCCTCATGAGCAACTTTATAAACCCAAAAATAATCTTGTGCAATGTGTGGACCAATTGTGTGCTGGAGTGCATTTAACGTCAAACTATCACTGTGATACTCCGGATGACCAATGTGACTATGAGGTTGAGTATGCGGATCATGGATCGTCTCTTGGGGTTCTTGTTCGAGACTATGTTCCTCTTCAATTCACGAATGGATCTCTGCTACGACCTAAGATAGCCTTTGGATGTGGATATGATCAAAAGTATTCTGGTCCTACCTCTCCACCTGCCACCACTGGAGTTCTTGGCCTTGGCAATGGCAGGACAGGTATTTTGTCTCAGCTTCATTCTCTAGGTCTGATTCGCAACGTAGTTGGTCATTGCTTAAGTGGCCGAGGAGGGTATTTATTCTTTGGAGATGATCTCATTCCCTCATCAGGAATTGTTTGGACACCCATGTTACGTAGTTCTTCAGAAAAACACTACAGTTTAGGACCAGCAGAACTGCTTTTCAATGGAAAGCTTACTACTGTTAAGAGTCTTGAACTTATTTTCGATAGTGGAAGCTCTTACACTTACTTTAATTCCAAAGCTTATCGTGCTGTTGTTGATCTGGTAAATAGTGAATTAAAGGGAAAACAATTGACAAGAGCAACTGAGGATCCGTCTCTTCCGATTTGTTGGAAGGGTGCAAAGTCTTTCAAATCTGTAAGTGATGTCAAAAACTATTTCAAGCCCTTAGCTTTGAGATTCAAAAAAGGGAAGAATTTGCAGATGCTAATACCACCAGAAGCCTATCTCATTGTCACAAAACACGGAAATGTTTGCTTGGGGATTCTGGATGGCACTGAAGTAGGACTGGGAGATATTAACATAATAGGAGACATCTCTTTACAAGATAAAATGGTAATTTACGACAACGAGAGGCAGCAGATTGGATGGATTTCTTCTGATTGCGATAGGATACCCAATATCGATCGTGACTTTGAAGGTGGTGCTTTTCCACACCCTTATGCAGCCAATTTGGGTATCTTTGAGGACCGAGGATGTCCCGCCGCATCTGAATTCTGA 1353 0.4257 MDFKTTKESKPFLSLFLFLLFSSIFPLSFSAASNKPLNSDKLHRLRSSAVFRLHGNVYPLGYYTVSLNIGYPPKLYDLDIDSGSDLTWVQCDAPCNGCTKPHEQLYKPKNNLVQCVDQLCAGVHLTSNYHCDTPDDQCDYEVEYADHGSSLGVLVRDYVPLQFTNGSLLRPKIAFGCGYDQKYSGPTSPPATTGVLGLGNGRTGILSQLHSLGLIRNVVGHCLSGRGGYLFFGDDLIPSSGIVWTPMLRSSSEKHYSLGPAELLFNGKLTTVKSLELIFDSGSSYTYFNSKAYRAVVDLVNSELKGKQLTRATEDPSLPICWKGAKSFKSVSDVKNYFKPLALRFKKGKNLQMLIPPEAYLIVTKHGNVCLGILDGTEVGLGDINIIGDISLQDKMVIYDNERQQIGWISSDCDRIPNIDRDFEGGAFPHPYAANLGIFEDRGCPAASEF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04589 450 CDD nucellin_like 61 413 IPR033823 GO:0004190
Vivi4g04589 450 Gene3D Acid Proteases 235 420 IPR021109 -
Vivi4g04589 450 FunFam Aspartyl protease family protein 39 234 - -
Vivi4g04589 450 Pfam Xylanase inhibitor C-terminal 273 408 IPR032799 -
Vivi4g04589 450 FunFam Aspartic proteinase Asp1 isoform A 238 417 - -
Vivi4g04589 450 PRINTS Pepsin (A1) aspartic protease family signature 277 288 IPR001461 GO:0004190|GO:0006508
Vivi4g04589 450 PRINTS Pepsin (A1) aspartic protease family signature 69 89 IPR001461 GO:0004190|GO:0006508
Vivi4g04589 450 PRINTS Pepsin (A1) aspartic protease family signature 385 400 IPR001461 GO:0004190|GO:0006508
Vivi4g04589 450 PANTHER ASPARTYL PROTEASES 25 407 IPR001461 GO:0004190|GO:0006508
Vivi4g04589 450 Pfam Xylanase inhibitor N-terminal 63 234 IPR032861 -
Vivi4g04589 450 Gene3D Acid Proteases 38 234 IPR021109 -
Vivi4g04589 450 SUPERFAMILY Acid proteases 55 418 IPR021109 -
Vivi4g04589 450 ProSiteProfiles Peptidase family A1 domain profile. 63 409 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04589 Vivi-Chr4 173769931 173772788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04589 47 417 Miscellaneous Gene Families AT1G44130 60.054 1.02e-170 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04589 - - gmx:100790299 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04589 4 173769931 173772788 Vivi4g04589 4 173769931 173772788 ECH