Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04539 ATGATAACATTCAAAGATCTATACACTGTCTTAACAGCAGTGGTTCCATTATACGTTGCTATGATCTTAGCCTACGGTTCCGTCCGTTGGTGGAAGATTTTCTCACCCGATCAATGCTCCGGCATAAACCGTTTCGTTGCGGTTTTCGCCGTCCCTCTCCTCTCTTTCCATTTCATCTCGTCCAATAATCCATACGAAATGAACTTCAGATTCATAGCAGCAGACACACTTCAGAAAATCATCATGCTTTTCGCGCTTTCGCTATGGACTAAGTTTACTAAAAATGGAAACTTAGAATGGATGATAACCATTTTCTCATTGTCCACACTTCCAAACACTTTGGTTATGGGGATTCCTCTTCTGATTGCTATGTATGGTGATTATTCCGGAACCTTAATGGTTCAGGTTGTGGTTCTTCAGTGTATCATATGGTACACTCTTTTGTTATTCCTTTTTGAGTACCGTGGTGCTAAGCTTTTAATCATGGAACAGTTTCCGGAAACCGCGGCTTCGATTGTCTCGTTTAAGGTCGATTCGGACGTTGTTTCGCTCGATGGAAGGGATTTTCTTGAAACTGATGCTTCTGTTGGCGATGATGGGAAGTTACATGTGACTGTGAGAAAATCTAACGCGTCGCGGAGGTCGTTTATGATGACTACTCCGCGACCGTCGAATTTGACTGGAGCTGAGATTTATAGTCTCAGCTCCACGCCGAGAGGGTCTAATTTCAACCATGCCGAGTTTTACTCCATGATGGGGTATCAACCAAGACATTCCAATTTTGGTAACAATGATTTGTATTCTGTTCAGTCTTCTAGAGGGCCAACTCCTAGACCGTCGAATTTCGAAGAAAATGGCGCAAGTTCTCCGAGATTCGGGTTTTATCCTGCGCAATCTGCGCCTGCTTCATATCCTGCGCCGAATCCGGAATTCTCTTCTACTGCGAAAACTGTGAAGAGTCAAAATTTGGTGCAGCAGCCACAACAGCAACAGGTTTCATTGCAGACTAAGGGCTCTCAGGATGCTAAGGAATTGCACATGTTTGTGTGGAGCTCAAGCGCTTCGCCGGTTTCGGAAAGTGCCGGTCTCAATGCCTTCCGAAATTCGGAACAGTCGGAAGAGGGTGCTAAAGAGATCAGGATGGTGGTTGCTGATGAACACAATCAAAATGGTGAAATCAATAACAAAGGGGAACTTGGTGGGGAAGAGGATTTCAAGTTCATTGGAGTGAAGGGAGAAGAACAAGTTGGAGAAGGGCCTAATGGGCCTAACAAGCTGAGTAGCAATGCAACACCAGATATCCATCCAAAAGCCACCGGAGTGGCCGATTCTGGTGTCGGAAAACTCATGCCTCCGGCGAGTGTCATGACTCGTCTCATACTCATTATGGTTTGGAGGAAACTTATCCGCAATCCCAACACTTATTCAAGTCTCATTGGTCTCATTTGGTCCCTTGTTGCATTTAGGTGGGGTGTTCATATGCCTAAAATAGTAGAGAAATCAATTTCCATACTGTCTGATGCTGGTCTTGGAATGGCTATGTTTAGCTTAGGTTTGTTTATGGCTCTTCAACCCAAGATAATTGCATGTGGAAATTCTGTTGCCTCATTTGCCATGGCTATTAGATTCCTTACTGGTCCAGCAGTAATGGCAGCTGCTTCTATCGCTGTCGGCCTCCGGGGTACCCTCCTTCATGTAGCCATTGTCCAGGCCGCACTTCCACAAGGAATTGTTCCATTCGTGTTTGCGAAAGAGTACAATGTTCATCCAGCAATTCTTAGTACAGCGGTTATATTTGGGATGTTGATAGCTCTTCCAATTACTCTTCTCTACTACATACTCCTTGGTTTGTAA 1854 0.4466 MITFKDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAVFAVPLLSFHFISSNNPYEMNFRFIAADTLQKIIMLFALSLWTKFTKNGNLEWMITIFSLSTLPNTLVMGIPLLIAMYGDYSGTLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDASVGDDGKLHVTVRKSNASRRSFMMTTPRPSNLTGAEIYSLSSTPRGSNFNHAEFYSMMGYQPRHSNFGNNDLYSVQSSRGPTPRPSNFEENGASSPRFGFYPAQSAPASYPAPNPEFSSTAKTVKSQNLVQQPQQQQVSLQTKGSQDAKELHMFVWSSSASPVSESAGLNAFRNSEQSEEGAKEIRMVVADEHNQNGEINNKGELGGEEDFKFIGVKGEEQVGEGPNGPNKLSSNATPDIHPKATGVADSGVGKLMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVAFRWGVHMPKIVEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVASFAMAIRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04539 617 Pfam Membrane transport protein 9 612 IPR004776 GO:0016020|GO:0055085
Vivi4g04539 617 MobiDBLite consensus disorder prediction 305 330 - -
Vivi4g04539 617 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 617 - -
Vivi4g04539 617 MobiDBLite consensus disorder prediction 262 287 - -
Vivi4g04539 617 MobiDBLite consensus disorder prediction 262 330 - -
Vivi4g04539 617 NCBIfam auxin efflux carrier 1 617 IPR014024 -
Vivi4g04539 617 MobiDBLite consensus disorder prediction 413 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04539 Vivi-Chr4 172790012 172793798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04539 1 617 Organic Solute Cotransporters AT1G70940 74.766 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04539 K13947 - gmx:100791394 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04539 4 172790012 172793798 Vivi4g04539 4 172790012 172793798 ECH