Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04535 ATGGAGGATCTTCCACAAGGTTACCGTCCTAACGTTGGTGTCTGTCTCATCAACTCTGATGATCAGATATTTGTGGCTTCTAGATTGAATGTTCCAGGAGCATGGCAAATGCCTCAGGGTGGCATTGAAGACGGTGAAGAACCCAAATCTGCTGCGATTAGAGAACTTCGAGAAGAAACTGGAATAGTATCTGCCGAGATAATCGCCGAGGTTGATAAATGGTTGACATATGACTTCCCTCCTGCTGTGAAGGCTAAGGTCAATCGTCTCTGGGGAGGCGAATGGCACGGACAGGCACAGAAATGGTTCCTCATGAAATTTACAAAAGATGAAGGCGAAATCAACTTAGCTACCGGTGAAGCAGACCCGGAATTCGCAGAGTGGAAATGGGCAAACCCTGAAGATGTTATTGAGCAGGCTGTGGACTATAAGAGACCAACCTATGAAGAAGTTGTAAAAACCTTCAAGCCTTACTTTCAAGGAAATGCAAAATCAGCGAAATGTAAATCGACAAAGTGGTGA 522 0.4502 MEDLPQGYRPNVGVCLINSDDQIFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELREETGIVSAEIIAEVDKWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMKFTKDEGEINLATGEADPEFAEWKWANPEDVIEQAVDYKRPTYEEVVKTFKPYFQGNAKSAKCKSTKW 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04535 173 Hamap RNA pyrophosphohydrolase [rppH]. 1 160 IPR022927 -
Vivi4g04535 173 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 5 161 - -
Vivi4g04535 173 FunFam Nudix hydrolase 25 1 159 - -
Vivi4g04535 173 Pfam NUDIX domain 8 150 IPR000086 -
Vivi4g04535 173 ProSitePatterns Nudix box signature. 40 61 IPR020084 GO:0016787
Vivi4g04535 173 PRINTS NUDIX hydrolase family signature 35 49 IPR020476 -
Vivi4g04535 173 PRINTS NUDIX hydrolase family signature 49 64 IPR020476 -
Vivi4g04535 173 SUPERFAMILY Nudix 7 158 IPR015797 -
Vivi4g04535 173 CDD Ap4A_hydrolase_plant_like 7 155 IPR022927 -
Vivi4g04535 173 ProSiteProfiles Nudix hydrolase domain profile. 7 153 IPR000086 -
Vivi4g04535 173 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04535 Vivi-Chr4 172725850 172728686 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04535 K26955 - gmx:100306071 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04535 4 172725850 172728686 Vivi4g04535 4 172725850 172728686 ECH