Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04281 ATGGGTTGGAAAGCAGCTGAGAAACTGATTAGGCATTGGAAAGTTGTGAGAGGGGATAATGTTATGATTATAAGGGGCAAAGATAAGGGCGAGACCGGGGTTATTAAGCGTGTTGTTCGCTCTCAGAATCGTGTCATTGTTGAAGGCAAAAATCTGGTAAAGAAGCATATCAAGCAAGGGCAAGGTCATGAAGGGGGTATCTTTACTGTTGAAGCCCCGCTTCATGCCTCCAATGTGCAAGTTCTTGATCCAGTCACAGGGAAGCCTTGCAAGGTTGGAACTAAGTATCTTGAAGATGGTACCAAAGTCAGAGTGTCCAGGGGAATAGGAGCTTCCGGCTCTATTATTCCTCGTCCTGAAATCTTAAAAATTAGAACTACACCAAGACCTTCCGTCGCTGGTCCCAAGGATACTCCAATGGAACATGTGTATGAGAAGACATACGATGCTAAAACAGGAAGGGGCATGCCTGAACTTTAA 480 0.45 MGWKAAEKLIRHWKVVRGDNVMIIRGKDKGETGVIKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVSRGIGASGSIIPRPEILKIRTTPRPSVAGPKDTPMEHVYEKTYDAKTGRGMPEL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04281 159 SUPERFAMILY Translation proteins SH3-like domain 10 108 IPR008991 -
Vivi4g04281 159 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 51 108 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vivi4g04281 159 Hamap 50S ribosomal protein L24 [rplX]. 13 107 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vivi4g04281 159 SMART kow_9 14 41 IPR005824 -
Vivi4g04281 159 Gene3D - 4 111 IPR014722 -
Vivi4g04281 159 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 3 149 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vivi4g04281 159 Pfam KOW motif 17 48 IPR005824 -
Vivi4g04281 159 CDD KOW_RPL26 18 81 IPR041988 GO:0003723
Vivi4g04281 159 ProSitePatterns Ribosomal protein L24 signature. 18 35 IPR005825 GO:0003735|GO:0005840|GO:0006412
Vivi4g04281 159 NCBIfam 50S ribosomal protein L24 14 107 IPR003256 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04281 Vivi-Chr4 168978033 168981210 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04281 K02895 - csav:115713450 305.449