Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03845 ATGAAACCCCCGAATCTCAACCTCTCAATTTCTCCCAAAGACACCATCATGGCCAACAAAGCAATCACCTACCTAAAACGCCACCCACAAAACCTCCCATCACTCTCACCTCACTTCACTCCCCAAGCAGCCACCTACCTTCTCCTCACTTCCCAAAACAACAAATCCCTAATCCTCAATTTCCTCAACTGGGCCAACTCCAAACCCCACCCTTTCTTCACCCCCCATTGCCAAACCCTAACCCTCCACATCCTCACTCGCTTCAACCTCTTCAAAACCGCTCAAACCCTAGCTCAAAACCTCATCACATCCTCAAACAACACCACCTCCCTCGTTTTCAATCTCCTCCAAGAAACCTATCACTCATGTAACTCGTCTTCTGCAGTTTTCGATTTACTAATCAAATCATATTCCCAGCTTAACCTAATCGAAAACGCTATTCACACCCTCCACCTCGCTAACCGCCACGGTTTCTCCCCGGGAGTATTGTCTTATAACTCAATCCTCGATTCAATACTCCGGAATGGGGCTGACCGGTTATCAATTCAGCACGGTAACCGTGTCTTCAATGACATGATTCATAACAATGTGTCGCCGAATATATATACTTACAATGTAATGATCCGTGGAATGGTTTCCGCGGGGAATTTGGATTCTGGTCTCCGTCTTATTCGTGAGATGGAGGCTAAAGGCTGTTTGCCGAATGTTGTGACTTATAACACCATGATAACTGCTTATTGTAAAGAGAATAAACTCGAGGAAGCGTTTGGTTTGTTGAGAATTATGGCTAAGAACCGGGTTGAGCCTAATTTGATTTCTTATAATGCTGTTATTAATGGTTTGTGTAGTCAAGGGAGGATGAATGAGACGATGGAAGTGATTGAGGAGATGAATTCAAATGGTTTGAGTCCTGATTGTATTACGTATAACACGCTTGTGAATGGGTTTTGTAAAGACGGGAATTTTCATCAGGCGCTTGTTCTTCTTCATGAGATGGCTGGTAAGGGTTTGTCGCCTAATGTTGTTACGTATACTACTTTGATTAATGGTATGTGTAAGGTTAAGAATTTGAGTCGTGCGATGGAGCTTTTAGATCATATGCGTGTTAGGGGACTTAGTCCTAATGAGAGAACTTTTACAACTTTAGTTGATGGGTTTTGTAGGCAAGGGTTAATGAATGAAGCTTATAAGGTTTTGAGTGAAATGATTGATAGTGGATTTTCGCCTTCGGTTGTTACTTATAATGCAATTGTAAATGGATTTTGTTGCTTAGGGAGGGTTGAGGAAGCTGTTGAAGTTTTGAAGGGTATGGTTGATAAGGGTTTGTTTCCTGATGTTGTTAGTTATAGTACTGTTATATCTTTGTTTTGCCGAAATGGGGATTTGGGAAAAGCATTTCAAATGAAGGTGGAAATGATTGAGAAGGGCATATTGCCTGATGTTGTGACGTATTCGTCGCTCATACAAGGTTTATGTCAACAAAGGAAATTGTCAGAAGCTTTTGATCTTTTCCGAGAGATGTTGGGGCGAGGTTTATCGCCTGATGAGGTTACTTATACTAGTTTGATGAATGGTTATTGTGTTGAAGGTGAATTGAGTAAGGCTCTTGATTTGCATGATGAAATGATGCATAATGGTTTTTTGCCCGATGTTGTTACTTATAGTGTACTTATTAACGGACTTAATAAGAAAGCTAGGACAAGAGAAGCTAAGAAGCTTCTTCTGAAGTTGTTATATGATGAGTCTGTACCAAATGACGTGACGTACAATACCCTGATAGAAAACTGCAGTGATAATGAATTTAAGAGTGTGGTAGGTCTTGTCAAAGGATTCTGCATGAAGGGTTTAATGGATGAAGCGGATCAAGTTTTTGAGACAATGCATCAGAGGAATTTTAAACCTGATGGAGCTGTATATAATTTGATGATACACGGACATTGTAGGCGTGGTAATGCTCGCAAAGCATATAATATGTATACAGAGATGGTGCGTTGCGGTTTTGTTTCTCATATGGTGACTGTAATTTCTCTCATTAAAGCTCTATCCAAGGATGGGATGAATGATGAGCTGAGTTTGGTAATGCAAAATATATTGAGCAGCTGTACGGTCAATGATGCCGAGCTACCTAAAGCACTTGTCCAGATTAACTTTAAAGAAGGTAACATGGATGCTGTTTTAACTATGCTCACGGAAATGGCCAATGATGGCTTGTTACCTGATGGTGGAGATTATTCACGTGCTTCAGCAAGTGCGTAG 2256 0.4096 MKPPNLNLSISPKDTIMANKAITYLKRHPQNLPSLSPHFTPQAATYLLLTSQNNKSLILNFLNWANSKPHPFFTPHCQTLTLHILTRFNLFKTAQTLAQNLITSSNNTTSLVFNLLQETYHSCNSSSAVFDLLIKSYSQLNLIENAIHTLHLANRHGFSPGVLSYNSILDSILRNGADRLSIQHGNRVFNDMIHNNVSPNIYTYNVMIRGMVSAGNLDSGLRLIREMEAKGCLPNVVTYNTMITAYCKENKLEEAFGLLRIMAKNRVEPNLISYNAVINGLCSQGRMNETMEVIEEMNSNGLSPDCITYNTLVNGFCKDGNFHQALVLLHEMAGKGLSPNVVTYTTLINGMCKVKNLSRAMELLDHMRVRGLSPNERTFTTLVDGFCRQGLMNEAYKVLSEMIDSGFSPSVVTYNAIVNGFCCLGRVEEAVEVLKGMVDKGLFPDVVSYSTVISLFCRNGDLGKAFQMKVEMIEKGILPDVVTYSSLIQGLCQQRKLSEAFDLFREMLGRGLSPDEVTYTSLMNGYCVEGELSKALDLHDEMMHNGFLPDVVTYSVLINGLNKKARTREAKKLLLKLLYDESVPNDVTYNTLIENCSDNEFKSVVGLVKGFCMKGLMDEADQVFETMHQRNFKPDGAVYNLMIHGHCRRGNARKAYNMYTEMVRCGFVSHMVTVISLIKALSKDGMNDELSLVMQNILSSCTVNDAELPKALVQINFKEGNMDAVLTMLTEMANDGLLPDGGDYSRASASA 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03845 751 Gene3D Tetratricopeptide repeat domain 509 579 IPR011990 GO:0005515
Vivi4g03845 751 Gene3D Tetratricopeptide repeat domain 368 438 IPR011990 GO:0005515
Vivi4g03845 751 Gene3D Tetratricopeptide repeat domain 439 508 IPR011990 GO:0005515
Vivi4g03845 751 Gene3D Tetratricopeptide repeat domain 300 367 IPR011990 GO:0005515
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Vivi4g03845 751 Gene3D Tetratricopeptide repeat domain 602 715 IPR011990 GO:0005515
Vivi4g03845 751 Gene3D Tetratricopeptide repeat domain 125 299 IPR011990 GO:0005515
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Vivi4g03845 751 FunFam Pentatricopeptide repeat-containing protein At5g39710 183 288 - -
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Vivi4g03845 751 Pfam PPR repeat 370 402 IPR002885 -
Vivi4g03845 751 Pfam PPR repeat 545 574 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 447 481 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 237 270 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 412 446 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 482 516 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 307 341 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 638 668 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 378 411 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 272 306 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 342 376 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 607 635 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 517 551 IPR002885 -
Vivi4g03845 751 NCBIfam pentatricopeptide repeat 202 236 IPR002885 -
Vivi4g03845 751 Pfam PPR repeat 607 632 IPR002885 -
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Vivi4g03845 751 Pfam PPR repeat family 479 527 IPR002885 -
Vivi4g03845 751 Pfam PPR repeat family 234 282 IPR002885 -
Vivi4g03845 751 Pfam PPR repeat family 638 683 IPR002885 -
Vivi4g03845 751 Pfam PPR repeat family 304 353 IPR002885 -
Vivi4g03845 751 Pfam PPR repeat family 409 453 IPR002885 -
Vivi4g03845 751 Pfam PPR repeat family 160 212 IPR002885 -
Vivi4g03845 751 PANTHER OS03G0856100 PROTEIN 53 384 - -
Vivi4g03845 751 FunFam Pentatricopeptide repeat-containing protein At5g39710 289 394 - -
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Vivi4g03845 751 SUPERFAMILY TPR-like 238 544 IPR011990 GO:0005515
Vivi4g03845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03845 Vivi-Chr4 157809699 157815136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03845 370 745 Glycosyltransferase AT1G05670 26.190 1.01e-39 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03845 - - gmx:100808787 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03845 4 157809699 157815136 Vivi4g03845 4 157809699 157815136 ECH