Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03644 ATGGGTGTAGTTAGTAATTCAGACTCAAATGGATCTGTTCAAAATTGCAATGGTTTAGAAGAGAAGCTTGATGATCTTCGTCGCCTTCTTGGTAAGGCTAATGGTGATCCATTGAGGATTGTTAGTGTAGGAGCTGGTGCTTGGGGGAGTGTTTTTGCAGCATTGTTGCAAGACACGTATGGTCAATTCCGCGACAAGGTACAAATCAGGATATGGAGGAGGCCGTTGAAGATTGTTGATAAAGCCACTGCGAAGCATTTGTTTGAAGTTATCAACTCTAGGGAAGATGTGTTGAGGAGGTTGATTCGGCGTTGCGCTTATTTGAAATATGTTGAGGCAAGGCTTGGAGATAGGACATTGTATGCCGATGAGATTCTGAAAGATGGTTTTTGTTTGAATATGATTGATACGCCAATTTGTCCTTTGAAGGTTGTTACAAACTTGCAGGAAGCTGTTTGGGATGCAGATATTGTTGTCAATGGATTGCCTTCGACCGAAACACGGGAGATTTTTGAAGAGATTAGTAAATATTGGAAGGAGAGAATCACAGTTCCTGTAATTATCTCTTTGTCTAAGGGTATAGAGGCTGCATTGGAGCCTGTTCCGCATATTATAACTCCAACAAAAATGATTCACAAAGCAACTGGAGTTCCCATGGAGAACATACTTTATCTTGGTGGTCCAAATATTGCATCAGAAATCTACCACAAGGAGTATGCAAATGCTAGAATATGTGGCGCTGAGAAATGGAGGAAGGCTCTGGCGAAGTTTCTGAGACAACCACATTTTATTGTTTGGGACAATAGTGACCTTGTTACCCATGAGGTTATGGGTGGCTTGAAAAATGTTTATGCAATCGGTGCTGGAATGGTAGCAGCCCTTACCAACGAGAGTGCTACCAGCAAATCAGTATATTTTGCACACTGTACATCCGAGATGATATTTATCACTCACTTGTTGGCTGAAGAACCTGAAAAACTCGCGGGACCATTATTGGCTGATACTTATGTGACTTTGTTGAAAGGTCGTAATGCATGGTATGGCCAGATGTTAGCTAAGGGTGAACTAAGTCCGGACATGGGTGACAGCATAAGAGGCAAAGGAATGATTCAGGGGGTGTCTGCAGTAGAGGCATTCTTTGAACTTTTGAGCCAATCAAGCTTGAATGTGTTGCACCCAGGAGATAATAAACCAGTTGCTCCGGTTGAGCTCTGCCCAATCTTGAAGACACTATATAAAATATTAATTTCCAGGGAACAATCAACAAAAGCTATTCTCCAAGCTTTGAGGGATGAAAATCTGAATGATCCCCGTGAACGTATTGAGATTGCACAAAGTCATGCATTCTACAGACCTTCACTGCTTGGACAACCTTGA 1377 0.4205 MGVVSNSDSNGSVQNCNGLEEKLDDLRRLLGKANGDPLRIVSVGAGAWGSVFAALLQDTYGQFRDKVQIRIWRRPLKIVDKATAKHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMIDTPICPLKVVTNLQEAVWDADIVVNGLPSTETREIFEEISKYWKERITVPVIISLSKGIEAALEPVPHIITPTKMIHKATGVPMENILYLGGPNIASEIYHKEYANARICGAEKWRKALAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSIRGKGMIQGVSAVEAFFELLSQSSLNVLHPGDNKPVAPVELCPILKTLYKILISREQSTKAILQALRDENLNDPRERIEIAQSHAFYRPSLLGQP 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03644 458 Gene3D - 270 430 IPR013328 GO:0016491
Vivi4g03644 458 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE 36 432 - -
Vivi4g03644 458 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 142 244 IPR011128 GO:0016616|GO:0046168|GO:0051287
Vivi4g03644 458 Coils Coil 16 36 - -
Vivi4g03644 458 FunFam Glycerol-3-phosphate dehydrogenase [NAD(+)] 132 266 - -
Vivi4g03644 458 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 270 IPR036291 -
Vivi4g03644 458 FunFam Glycerol-3-phosphate dehydrogenase [NAD(+)] 270 430 - -
Vivi4g03644 458 FunFam Glycerol-3-phosphate dehydrogenase [NAD(+)] 20 101 - -
Vivi4g03644 458 Gene3D - 20 101 - -
Vivi4g03644 458 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 270 425 IPR008927 -
Vivi4g03644 458 Gene3D - 133 266 - -
Vivi4g03644 458 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 42 59 IPR006168 GO:0006072|GO:0009331|GO:0047952
Vivi4g03644 458 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 263 287 IPR006168 GO:0006072|GO:0009331|GO:0047952
Vivi4g03644 458 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 270 424 IPR006109 GO:0005975|GO:0047952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03644 Vivi-Chr4 154923168 154926817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03644 9 458 Acyl Lipid Metabolism Gene Families AT2G41540 87.805 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03644 K00006 - gmx:100797552 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03644 4 154923168 154926817 Vivi4g03644 4 154923168 154926817 ECH
Vivi4g03644 4 154923168 154926817 Vivi4g03644 4 154923168 154926817 PCT