Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02936 ATGTTTTTCAGTGGCGATCCCTCTAATCGCAAACGAGTTGATTTAGGTGGGAGAAGTTCGAAAGAAAGGGATAGGAAGAATCTTCTAGAACAAACGCGATTGGAACGAAATCGGCGGTTGTGGTTGCGTCAGCAGAACTCTGCTGCACTCAGAATTCAGAAATGCTTCAGAGGGAAAAGAGTTGTCAGAGCGGAACAGTCTAAGCTACGACAGAAATTCCTTAAAATCTATGGAAAGAATTTCCTTAATGTTGACAGGAAAGTGTTCGGTCCAGATTCTGATTTCCTCCGCCAGTTCCTCTATTTCTTTAATGCTGAAAACCATGATGATTTTTTATTTCTTGTGCAAATTGGCCGATTGCTTCTACAGTTTGTTCAAGAGAGTGGGGATGCTGTGAGGCTTTTTGCTGGTGAGGATTACTCATCCATATGTGCTTTGGTGAACTACCGAGTGAAGAAACTTGCATATAATTGTATTCGTGCATTACATCATAATAGAAATCAGTTGAAGGATCAACTTTTATTGACTCCGAAGGAGTCTAATGCATCAGCTATTCCATTATTGGAAGTTTTAGTACTGTTGATAGATCTCAAGCTACCATGGAGCTGTAAGATAGTAGGATATCTATCTCAAAACAATGGATTCAATCTACTTAGAGAAATTATTCTTACAGGAAAGGGTAATGCAGAAAAATGTATAGGATCGTCTTTGGAGCGTGTGCTTACAGGTGTAATGTGTCACATTGGTCAGAAACCATGTATTTGTTCAGACACTGATCCAAGATATAGCTTCTCATTGCAAATCCTTACAATTCCTTTCTTATGGCATGTGTTTCCAAACCTTAGACAGGTTTTTGCAAGACAAAGCATGAGCCTACATTACATTCATCAAATGGCAACATTTGTGCCTAATTTGATCAGTTTTCTACCTAAGGATATATCAGATGAATTTCCTACGTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGAGTTGCTTTGTCTCAACCTGACTGTTCGTTCAATATGGCCATAGACCTTGCAGCTGTTACTACATTTTTACTGGAAGCGCACCCCTCTCTGACAAGATCTGATAGTAGAGAAAATTCTATGATTGCTGAGGATGATGTGACTGGCGATGATGAAGTCATGGAAGTAGCTCTGGATAGGAAATTGGACCAACAAATTTGTAATTCCATAGATACCCGCTTCCTTCTGCAATTGACAAATATATTATTTAGAGGTATTTCATCTGCCAATGGGCCAGATGATATGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTCAATACTTTGCCACTTGAAAGGATTATGACTGTGCTTGCCTACAGAACTGACCTTGTTCCTATGCTTTGGAATTTTATGAAACGGTGCCATGAGAATAAAAAATGGTCATCTTTGTCTGAGCAATTATCATATCTCTCAGGAGATGCCCCTGGTTGGCTGTTGCCTCTTGCTGTATTCTGTCCTGTCTACAAGCATATGCTTATGATAGTTGATAATGAGGAATTTTATGAGCAGGAGAAACCCCTATCACTGAAGGATATCAGCAGCCTCATCATTCTGTTGAAGCAGGCTTTGTGGCAGCTACTGTGGGTAAATCATACCTCATCTGCTAATTCGGTTAGATCTATTCCAGTTAGGACAAGCAGTAAAAAGTTGTCTGTTGAAGCCGTTCAACAGAGGGTTAGCATAGTCGTCTCTGAGCTCCTGTCCCAGCTCCAAGATTGGAACAACAGACGCCAGTTTACATCCCCCAGTGATTTCCATGCTGATGGGGTGAATGACTTTTTTATCTCTCAGGCTGTTATAGAAAATGCACGAGCAAATGAAATTTTAAAGCAGGCTGCTTTCTTGATACCATTTACAAGCAGGGTTAAAATTTTCACCTCTCAACTAGCTGCTGCTAGGTTAAGACATGGATCTCAGGCTGTATTTACTAGAAACCGGTTCAGAATAAGACGAGATCATATTTTGGAAGATGCCTATAATCAAATGAGTCAGTTGTCAGAAGATGATCTCCGAGGACTGATTCGTGTGACTTTTGTCAATGAGTTTGGAGTTGAAGAAGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGGGCTTCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCGGATCATCTGCTTTATCCAAATCCCGGATCTGGAATGATACATGAGCAACATCTCCAATTTTTCCACTTTCTTGGTACTCTGCTTGCAAAGGCTATGTTTGAAGGAATTCTTGTGGATTTACCATTTGCTACTTTCTTTTTGAGCAAATTGAAACAGAAGCACAACTATTTGAATGACTTGCCTTCCTTGGACCCTGAATTATATCGTCATCTTATATTTCTAAAGCGTTATGAGGGTGACATTTCGGAATTGGAACTATACTTTGTTATATTAAATAATGAATATGGAGAGCAAACAGAAGAGGAGCTTCTTCCAGGGGGAAAGAACCTGCGCGTCACAAATGAGAATGTTATTACTTTTATCCATCTTGTAGCCAATCATCGCTTGAATTCTCAGATACGCCAACAAAGTTCTCATTTCTTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGATCACTTGACAGCTTGGACGTTGATGATTTGCGGCAGCATACGAATTATGCAGGAAGCTATCATAGTGAGCATGATGTGATTGAGATGTTCTGGGAAGTACTCAAAGGCTTTTCAATGGAAAACCAGAAAAAATTCTTAAAGTTTGTGACAGGTTGCTCTCGGGGACCATTGCTTGGATTCCGATATCTTGAGCCTTTGTTCTGCATACAAAGGGCTGGTGGTAATGCTTCTGAAGATGCTCTGGAAAGATTACCAACAGCAGCTACCTGTATGAATCTGTTAAAACTTCCACCATATAGAAGTAAGGATCAACTTGAATCCAAATTACTGTATGCCATAAATGCTGATGCTGGCTTTGATTTGAGTTAA 3075 0.3977 MFFSGDPSNRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNSAALRIQKCFRGKRVVRAEQSKLRQKFLKIYGKNFLNVDRKVFGPDSDFLRQFLYFFNAENHDDFLFLVQIGRLLLQFVQESGDAVRLFAGEDYSSICALVNYRVKKLAYNCIRALHHNRNQLKDQLLLTPKESNASAIPLLEVLVLLIDLKLPWSCKIVGYLSQNNGFNLLREIILTGKGNAEKCIGSSLERVLTGVMCHIGQKPCICSDTDPRYSFSLQILTIPFLWHVFPNLRQVFARQSMSLHYIHQMATFVPNLISFLPKDISDEFPTYACLLGNILETGGVALSQPDCSFNMAIDLAAVTTFLLEAHPSLTRSDSRENSMIAEDDVTGDDEVMEVALDRKLDQQICNSIDTRFLLQLTNILFRGISSANGPDDMEVAAVGAVCGFLYVIFNTLPLERIMTVLAYRTDLVPMLWNFMKRCHENKKWSSLSEQLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDISSLIILLKQALWQLLWVNHTSSANSVRSIPVRTSSKKLSVEAVQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVIENARANEILKQAAFLIPFTSRVKIFTSQLAAARLRHGSQAVFTRNRFRIRRDHILEDAYNQMSQLSEDDLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRASFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKRYEGDISELELYFVILNNEYGEQTEEELLPGGKNLRVTNENVITFIHLVANHRLNSQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGSYHSEHDVIEMFWEVLKGFSMENQKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEDALERLPTAATCMNLLKLPPYRSKDQLESKLLYAINADAGFDLS 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02936 1024 MobiDBLite consensus disorder prediction 1 22 - -
Vivi4g02936 1024 Pfam HECT-domain (ubiquitin-transferase) 719 1024 IPR000569 GO:0004842
Vivi4g02936 1024 FunFam Putative Ubiquitin-protein ligase E3C 788 867 - -
Vivi4g02936 1024 Gene3D Hect, E3 ligase catalytic domain 788 867 - -
Vivi4g02936 1024 ProSiteProfiles HECT domain profile. 683 1024 IPR000569 GO:0004842
Vivi4g02936 1024 FunFam Putative Ubiquitin-protein ligase E3C 906 1023 - -
Vivi4g02936 1024 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Vivi4g02936 1024 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 10 1024 IPR044611 GO:0000209|GO:0061630
Vivi4g02936 1024 CDD HECTc 662 1022 IPR000569 GO:0004842
Vivi4g02936 1024 Gene3D Hect, E3 ligase catalytic domains 664 902 - -
Vivi4g02936 1024 SMART hect_3 681 1024 IPR000569 GO:0004842
Vivi4g02936 1024 Gene3D Hect, E3 ligase catalytic domain 906 1023 - -
Vivi4g02936 1024 SUPERFAMILY Hect, E3 ligase catalytic domain 653 1016 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02936 Vivi-Chr4 137292667 137312651 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02936 K10589 - gmx:100787467 1763.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02936 4 137292667 137312651 Vivi4g02936 4 137292667 137312651 ECH
Vivi4g02936 4 137292667 137312651 Vivi4g02936 4 137292667 137312651 PCT