Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02927 ATGGAGGCACTGTTCCAGGGTTCTTATCTCTTAACCAAACCTCCAAAAACCGCTACCATGCCAAATTCTCTCAGGTTCAACTTCACATCCCGCTCCACCAGTTACTTTTCTTCTTCAGGGAAGTTTTCTGTTCAGAATAAACCCAGATCATTATCACTAGTTACCAATGCTACTAAGAAAGATAAGAAAGAAGATAGCCATAGCTTTGCACCCAAATTGAATGAAGTCACTGGGTTCTTCCCTGAATCTGTTCTTCTTAAAAAGAAGGAAGTTGAGGTAGATGGTAAACTTCTTCCGGAGTTTGAAGATGAAGATGAAAGAGAACTATACGAATCGTTGGCACTTGAAGTGGAAACTGCTATGGATGTTGAATTATTGCGCCACTACGAGATTGTTTACTTAATTCATGAGCAGCATGAAGAAGAGGTTACATCTGTCAATGAGAAAATTCAAGACTTTTTGAGAGAGAAGAAAGGAACAGTGTGGAGATTTAGCGATTGGGGTATGAGAAGGCTGGCTTACAAAATACAGAAAGCTAATAACGCACACTACATTTTGATGAACTTTGAGTTGGATGCGAAATACATCAACGACTTCAAGACTTTGTTGGACAAAGATGAAAGAGTCATTCGACATCTTTTGGTACAGAAGGACGAAGCAATCACTGAAGATTGCCCTCCCCCTCCCGAGTTTAGCACACTTGATGATGAAGACGGAGAAGATGATGATGAACTTGATGATGAATGGGATGATGACGATGAAGATGAAGAAGAGGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGACTATGATGACGATGACGGAGTAATCATCGTAGACGATGATGATTTGGGATTGTTAGAGAGCGAAATATTAAAACAATGA 897 0.4036 MEALFQGSYLLTKPPKTATMPNSLRFNFTSRSTSYFSSSGKFSVQNKPRSLSLVTNATKKDKKEDSHSFAPKLNEVTGFFPESVLLKKKEVEVDGKLLPEFEDEDERELYESLALEVETAMDVELLRHYEIVYLIHEQHEEEVTSVNEKIQDFLREKKGTVWRFSDWGMRRLAYKIQKANNAHYILMNFELDAKYINDFKTLLDKDERVIRHLLVQKDEAITEDCPPPPEFSTLDDEDGEDDDELDDEWDDDDEDEEEEEEEEEEEEEEEEEDYDDDDGVIIVDDDDLGLLESEILKQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02927 298 MobiDBLite consensus disorder prediction 220 287 - -
Vivi4g02927 298 SUPERFAMILY Ribosomal protein S6 126 226 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vivi4g02927 298 CDD bS6 128 217 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vivi4g02927 298 Pfam Ribosomal protein S6 128 215 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vivi4g02927 298 MobiDBLite consensus disorder prediction 230 287 - -
Vivi4g02927 298 FunFam 30S ribosomal protein S6 126 220 - -
Vivi4g02927 298 Hamap 30S ribosomal protein S6 [rpsF]. 126 219 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vivi4g02927 298 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 124 237 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vivi4g02927 298 Coils Coil 136 156 - -
Vivi4g02927 298 Coils Coil 250 277 - -
Vivi4g02927 298 NCBIfam 30S ribosomal protein S6 127 218 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vivi4g02927 298 Gene3D - 122 224 IPR014717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02927 Vivi-Chr4 136658745 136660606 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02927 - - mtr:11416822 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02927 4 136658745 136660606 Vivi4g02927 4 136658745 136660606 ECH