Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02872 ATGAGGGATATGGCTTTGCAGAAGTGTGTTCCTTCCGGTGATGCACCTGCTGTTAATTTGAAACATTTGAGATTTTCCAGTAAGATCCCTGAGAAAACCCATCCTGATGGGGAACATCAGAATCGTAACATGGATGTGGATGTTGACCTTGGGGAGGTTTATTTTCTCATTATGCACTTCCTTTCTGGCGGGCCATGTCATAAAACTTATTTACAGTTTTGGAATGAGCTTATGGAGAATCAACTATTGCCTAGAAGGTACCATGCTTGGTATTCAAGGAGTGGGGCATGCAGTGGAGTTGCCCACGATGATGGTCAATCATTTCCTTTAAGCTATAATAAGTTGGCGGAGAGGTACCCTCATATTGAAAAGGATCACTTGGTAAAGCTTTTGAAGCAATTGTTGTTAAATAGAGCCTCCCTGTCACCAGGCACGGGTACTGGAAAAACTCCAAATGCAGCTGATGTACCCACTCTTCTGGGAAGCGGATCATTTTCACTTCTGAACCATGACAAGGATAAAGTGAATGAAGATGTCAAACCGCCACCTGCTTATATGCGCTGGCCTCATATGAAAGCCAATCAGGTTCATGGACTTCATTTAAGGGAAATCGGGGGTGGTTTTCCAAGACACCATCGTGGACCATCTATACGTGCTGCATGCTATGCCATTGCAAAGCCTTCTACTATGGTACAGAAGATGCAAAATATCAAGAGAGTTAGAGGACACCGAAATGCTGTTTATTGTGCTATATTTGACCGGTCAGGAAGATATGTTATTACTGGTTCAGATGATCGACTTGTAAAAGTTTGGTCAATGGAAACTGCATATAGTTTGGCCAGTTGTCGCGGTCACGAAGGTGACATTACTGACTTGGCTGTGAGTTCAAACAATGCTTTAGTTGCGTCCTCATCAAATGATTGTGTTATTCGAGTTTGGCGCCTGCCAGACGGCTTACCAATATCAGTTTTGCGGGGACATACTGGAGCTGTTACAGCCATAGCCTTTAGTCCCAGACCTAATGCTGTTTACCAGCTTTTATCCTCCTCTGATGATGGAACTTGTAGGATATGGGATGCTAGGCATACCCAATCAAGTCCTAGATTATATGTTCCAAGGCCTTCTGATTCTGTTGGAAGGAGTAGCGGCCAATCCTCAAATACAATGCCCCCGAGTCATCAAATTTTTTGCTGTGCATTTAATGCTAATGGAACTGTCTTCGTCACTGGTAGCTCTGATAATCTTGCGAGGGTCTGGAATGCTTGTAAACTAAGTATGGAAGATACTGACCAACCAAATCATGAGATAGATGTCCTGTCTGGTCATGAAAATGATGTAAACTATGTGCAATTTAGTGGATGTGCAGTAGCATCTCGATTTTCCGCAACAGAAACTTGGAAGGAGGAAAATGTTCCCAAATTTAAGAACTCCTGGTTGAATCATGATAACATAGTTACCTGCTCTCGCGATGGCAGTGCTATTATATGGATTCCAAAATCACGAAGGTCACATGGAAAAAGTGGTCGCTGGGCTCGTGCATATCATCTCAAAGTTCCATCTCCACCTATGCCTCCACAACCTCAGAGAGGTGGTCCACGCCAGAGAATTCTACCAACACCACGAGGTGTAAATATGATTGTTTGGAGCCTAGACAACCGCTTTGTTCTTGCAGCTATTATGGATTGCAGAATCTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTGCACTCATTGACTGGACATACTGAATCTACATATGTTCTGGATGTTCATCCTTTTAATCCACGGATAGCAATGAGTGCTGGATATGATGGAAGAACTATTGTATGGGATATATGGGAAGGCGTGCCTATCAGGATATATGAGATATCGCGCTTCAAGTTGGTGGATGGAAAATTTTCTCCGGATGGGACATCAATTATACTATCTGATGATGTTGGTCAACTATATATATTAAGCACGGGCCAAGGTGAGTCCCAGAAAGATGCCAAATATGATCAGTTCTTTCTTGGTGATTATCGACCTCTCATTCAAGACACACATGGTAATATACTTGACCAGGAAACTCAGCTCATTCCATATCGACGAAACGTGCAAGATTCACTTTGTGATTCAGCAATGATACCATACCCAGAACCTTATCAGAGTGAATTTCAAAAGAGACGACTAGGAGCTTTAGGCATCGAGTGGCGCCCGTCATCGCTAAAGCTTGCTGTTGGTCCTGATTTCAGTCTGGACCCAGAGTATCATATGCTCCCATTGGCTGATTTGGACATGCTTGCAGATCCACTGCCTGAGTTCATAGATGCTATGGATTGGGTGCCAGAAATTGAAGTGTTTGCTGATGATACTGATTCAGAATATAATTTAACTGAAGATAGTTCTTCGCGGGGTGAGAAAGGATATTCAAGCTCCAGTGCCTCTGGTGATCCTGGTTGCAGCACCGATAACAGTGACGATGAGGACGCTCACATGGACAGCATTCGTAGATCGAAAAGGAAAAAACAGAAGACCGGAATTGAGACTATGACTTCATCTGGGAGACGCGTTAAAAGGAGGAATTTGGAGGAGTGTGAAGGAAATGTTGCCAGTAGTAGCCGAAATAGGAAGGGAAAAAGTGAACTAAAATCATCAAGGAGGAAATCTTCTAAATCGAAATCTTCCAGACCTCAAAGAGCTGCTGCACGCAATGCTCTGCATTTATTTTCAAGAATTACAGGCACTCCAATAGAAGGAGAAGAAGATAGTTTGGTTGATGATTCTTCAGACAGTGACTCAACATTGCAAGAGTCTAATATTGACAGTGATGAATCCGGTAGAGCTTCCCCAAATGACCAACGGAATTATTCCAAGGGAAAAGAAGTATTACTGTATGAATCAGAGGATACAAAATCTCATAACTTGACTGAGACTCATGTAAACAGGAGGAGGTTGGTCCTCAAATTGCCAAATAGGGATTCATCTAAAACCACACATGAGTTTAAGAACCAGGCTCAGTTGGTTGGCTCGTCATCAAAAACTGCTCAAGAATCTCCAGATTTTAATTGGAACAGACCATGTTCTACAGAGCCAGGTTATTGTTTTGGCAATGGAAGTTCCTCTTCAATTGAAAGAACAGATCAAGTAAAACTTGACCAGGTATCAAAAGGTATAGATTTACTGGAGAAAATTAGATGGGGGGAGGTTAGGGCTCGTTCATCTAAACCTCTCAGAGCAAGAGAAGCTGTGCCACCAGGTGCAAATCTCAACTCTGTTAGACTTCCTAACCATCTCAATGAAGAAGAAAATGTTAGTACTGGGCATGAGAAAGAGGACAAGGACTTCAGCAGTACACCAACCCCTGCTTTAGAAATCCAAAATGACAAGGCAGAAAGTTTGCCAGAAATAAATGATAATTGTGCTGGTACTACATCCCAGGCTTTTAATCCTACTGAGAATGGAGAACCCCTCATATCCTCCAGCAATAACAGGGATCAAGATGAATCACTAGTTTCTGCATGCATGATTCCTCGGGATGCTACTCTTGTATCTGTCGGCCAGAATGTGGCTGACCAACTACCTGAACAAAATATTGGTTTTCCTACTGTTTCAACAAAGCTAAGGTCTAAAAGGGGTTCAAGGAATCCTGAAAGTCCATGTAAACTTGAAACAAAATCTTCAGTGCTAAAGAATAATGCATCTAGCTGTAATGCTGATAATAACTTGAAAAATGAAGAGCATGTGGTTGTGGTTAAGGATGACAACGATACTAGATTGACATCTAATCTGAGAGAAAATGGTTGTCAAGAAGTAAATGCTCAGACTAAACAAGTTAGTACTTCACATGATTCAATAGAACCACGGTCCAATAGAGATAAAATGTTCAAAGCTGTTTATAGAAGATCAAGATCACATAAGGCTGTGACTAATTTAGCTGAAGGTAGTGGCTTGGGAGAGTCAACTTCAAATGGGAGCAACAGTAATTTTAATGTGGCAGTGGACAGTAATGGCACAAATGAAGCTCTTCATACCAATGGTTCCTTAGAGTTGGAACAAAGTACTTCTGTTCCAAATAATGAGCGGAGTAATCTTAAAGTGCAGCAAGGAAATGGGTCTAGTATGGTTAGGATTCCTCAGAATGTTTCACCAAATAAAGGAAAACTTTCGGAAGAAGAAAGGGGTTCTTGTTCAAAATTAACTGTTGGTTTGAGGTCCACTAGGAATCGGAGGTCTACTTATAATATCCGTGAGACTAGTCCTGTAAATAGAAGAAAATCTCTACAATCAGCTGTGAAGGGGTCCTGGTTGCTGTTATCAACACATGAGGAAGGATGTAGATATATTCCTCAACAGGGAGATGAAGTTGTATATCTAAGACAGGGACACCAGGAGTATATAGATTATAGCCGTAAAAGAGAGTCGGGACCTTGGGTGTCACTTGCGGGACATCTAAGAGCTGTAGAATATTGTAGAGTTCAAAGCCTTGAGTATTCTCATGTTCCAGGGTCTGGTGATAGCTGCTGCAAAATGACCCTCCAGTTTGTGGATCCAAATTCAAGCGTTGTTGGCAAAACTTTTAAATTAACCCTACCTGAAGTGACTGGTTTCCCTGATTTTCTTGTTGAAAGAACTAGGTTTGACGCTGCTATCGAAAGAAATTGGACACGCAGGGATAAGTGCAGGGTTTGGTGGAAGAATGAGGATAACTCCTCAGGTAATTGGTGGGAGGGTCGAATTCAGTTTGTGAAGGCCAAATCATCTGAATTTCCAGACAGTCCATGGGAGAGATATAGTGTTCGGTACAAGAGCGACCTATCTGATGAACATTTGCATAGTCCTTGGGAGCTTTTTGACTCTGATACTCAATGGGAACAGCCTCATATTGATGATAACACAAGAAATAAACTGCTATCTGCTCTCACCAAATTACAGCAGTCAAGCAACACAATTCAGGATCGTTATGGCTTGCATGAATTGGAGAAAATTTCAAATAAGACAAAATTTACAAACAGGTTTCCTGTTCCTCTGCCTATTGAGTTGATACAATTAAGGCTGGAGAATAGTTACTACCGATGTTTGGATGCACTCAAGCATGATGTCTCAATTTTCATCTCCAATTCCACCTCATATTTTGAAAAGGATGCAGAAATGACAGCCAAAATCAAACGCTTATCAGAGTGGTTCGTGCGAACATTTTCATCTTTATAG 5187 0.4176 MRDMALQKCVPSGDAPAVNLKHLRFSSKIPEKTHPDGEHQNRNMDVDVDLGEVYFLIMHFLSGGPCHKTYLQFWNELMENQLLPRRYHAWYSRSGACSGVAHDDGQSFPLSYNKLAERYPHIEKDHLVKLLKQLLLNRASLSPGTGTGKTPNAADVPTLLGSGSFSLLNHDKDKVNEDVKPPPAYMRWPHMKANQVHGLHLREIGGGFPRHHRGPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKVWSMETAYSLASCRGHEGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARHTQSSPRLYVPRPSDSVGRSSGQSSNTMPPSHQIFCCAFNANGTVFVTGSSDNLARVWNACKLSMEDTDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSATETWKEENVPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWARAYHLKVPSPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGVPIRIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNILDQETQLIPYRRNVQDSLCDSAMIPYPEPYQSEFQKRRLGALGIEWRPSSLKLAVGPDFSLDPEYHMLPLADLDMLADPLPEFIDAMDWVPEIEVFADDTDSEYNLTEDSSSRGEKGYSSSSASGDPGCSTDNSDDEDAHMDSIRRSKRKKQKTGIETMTSSGRRVKRRNLEECEGNVASSSRNRKGKSELKSSRRKSSKSKSSRPQRAAARNALHLFSRITGTPIEGEEDSLVDDSSDSDSTLQESNIDSDESGRASPNDQRNYSKGKEVLLYESEDTKSHNLTETHVNRRRLVLKLPNRDSSKTTHEFKNQAQLVGSSSKTAQESPDFNWNRPCSTEPGYCFGNGSSSSIERTDQVKLDQVSKGIDLLEKIRWGEVRARSSKPLRAREAVPPGANLNSVRLPNHLNEEENVSTGHEKEDKDFSSTPTPALEIQNDKAESLPEINDNCAGTTSQAFNPTENGEPLISSSNNRDQDESLVSACMIPRDATLVSVGQNVADQLPEQNIGFPTVSTKLRSKRGSRNPESPCKLETKSSVLKNNASSCNADNNLKNEEHVVVVKDDNDTRLTSNLRENGCQEVNAQTKQVSTSHDSIEPRSNRDKMFKAVYRRSRSHKAVTNLAEGSGLGESTSNGSNSNFNVAVDSNGTNEALHTNGSLELEQSTSVPNNERSNLKVQQGNGSSMVRIPQNVSPNKGKLSEEERGSCSKLTVGLRSTRNRRSTYNIRETSPVNRRKSLQSAVKGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIDYSRKRESGPWVSLAGHLRAVEYCRVQSLEYSHVPGSGDSCCKMTLQFVDPNSSVVGKTFKLTLPEVTGFPDFLVERTRFDAAIERNWTRRDKCRVWWKNEDNSSGNWWEGRIQFVKAKSSEFPDSPWERYSVRYKSDLSDEHLHSPWELFDSDTQWEQPHIDDNTRNKLLSALTKLQQSSNTIQDRYGLHELEKISNKTKFTNRFPVPLPIELIQLRLENSYYRCLDALKHDVSIFISNSTSYFEKDAEMTAKIKRLSEWFVRTFSSL 1728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02872 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 281 IPR001680 GO:0005515
Vivi4g02872 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 275 - -
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 367 388 - -
Vivi4g02872 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 323 IPR001680 GO:0005515
Vivi4g02872 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 315 - -
Vivi4g02872 1728 FunFam WD40/YVTN repeat-like-containing domain 1622 1728 - -
Vivi4g02872 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 612 IPR001680 GO:0005515
Vivi4g02872 1728 SUPERFAMILY Bromodomain 1659 1726 IPR036427 GO:0005515
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 1307 1378 - -
Vivi4g02872 1728 Gene3D - 390 463 IPR015943 GO:0005515
Vivi4g02872 1728 CDD Bromo_WDR9_I_like 1600 1728 - -
Vivi4g02872 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 368 IPR001680 GO:0005515
Vivi4g02872 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 359 - -
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 1095 1110 - -
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 1303 1392 - -
Vivi4g02872 1728 Gene3D - 219 389 IPR015943 GO:0005515
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 987 1013 - -
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 1138 1157 - -
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 993 1013 - -
Vivi4g02872 1728 SMART WD40_4 317 359 IPR001680 GO:0005515
Vivi4g02872 1728 SMART WD40_4 233 272 IPR001680 GO:0005515
Vivi4g02872 1728 SMART WD40_4 275 314 IPR001680 GO:0005515
Vivi4g02872 1728 SMART WD40_4 571 611 IPR001680 GO:0005515
Vivi4g02872 1728 SMART WD40_4 382 420 IPR001680 GO:0005515
Vivi4g02872 1728 SMART WD40_4 432 497 IPR001680 GO:0005515
Vivi4g02872 1728 SMART WD40_4 530 568 IPR001680 GO:0005515
Vivi4g02872 1728 CDD WD40 236 611 - -
Vivi4g02872 1728 Gene3D - 471 668 IPR015943 GO:0005515
Vivi4g02872 1728 FunFam WD40 domain-containing protein 385 464 - -
Vivi4g02872 1728 Pfam WD domain, G-beta repeat 279 313 IPR001680 GO:0005515
Vivi4g02872 1728 Pfam WD domain, G-beta repeat 320 359 IPR001680 GO:0005515
Vivi4g02872 1728 Pfam WD domain, G-beta repeat 572 611 IPR001680 GO:0005515
Vivi4g02872 1728 Pfam WD domain, G-beta repeat 392 420 IPR001680 GO:0005515
Vivi4g02872 1728 Pfam WD domain, G-beta repeat 235 272 IPR001680 GO:0005515
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 873 887 - -
Vivi4g02872 1728 FunFam PH-interacting protein isoform X1 471 669 - -
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 922 949 - -
Vivi4g02872 1728 FunFam PH-interacting protein isoform X1 215 384 - -
Vivi4g02872 1728 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Vivi4g02872 1728 PANTHER WD REPEAT DOMAIN 9 1118 1721 - -
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 784 951 - -
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 795 814 - -
Vivi4g02872 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 420 IPR001680 GO:0005515
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 1070 1089 - -
Vivi4g02872 1728 MobiDBLite consensus disorder prediction 1094 1113 - -
Vivi4g02872 1728 SUPERFAMILY WD40 repeat-like 232 654 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02872 Vivi-Chr4 134948207 134968552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02872 232 420 Miscellaneous Gene Families AT5G08390 23.590 9.64e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02872 K11797 - gmx:100818665 2685.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02872 4 134948207 134968552 Vivi4g02872 4 134948207 134968552 ECH