Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02870 ATGAGTACCATGAAATTTTGCCGTGAATGTAACAACATTCTATACCCTAAAGAAGACAGAGACGCTAAGATACTTCTCTATGCTTGCCGCAATTGCGATCACCAGGAGAATGCTGATAACTTCTGTGTGTATAGAAATGAAATTCATCACTCTGTTGGAGAGCGCACTCAAGTCTTGCAGGATGTAGCTGCAGATCCAACTCTTCCTCGTACCAAGGCTGTTCGCTGCGTTCAATGCAACCACGGCGAAGCTGTCTTTTTCCAGGCAACTGCCAGAGGGGAGGAAGGAATGACTCTCTTCTTCGTTTGCTGCAACCCAAACTGTGGACACCGTTGGAGAGACTGA 345 0.4667 MSTMKFCRECNNILYPKEDRDAKILLYACRNCDHQENADNFCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02870 114 CDD Zn-ribbon_RPB9 64 113 IPR034012 GO:0006379
Vivi4g02870 114 Gene3D - 1 46 - -
Vivi4g02870 114 FunFam DNA-directed RNA polymerase II subunit RPB9 1 46 - -
Vivi4g02870 114 SMART rpol9cneu 5 58 IPR001529 GO:0006351
Vivi4g02870 114 SMART Cys4_2 74 114 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi4g02870 114 SUPERFAMILY Zinc beta-ribbon 51 114 - -
Vivi4g02870 114 FunFam DNA-directed RNA polymerase subunit 47 114 - -
Vivi4g02870 114 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Vivi4g02870 114 PANTHER DNA-DIRECTED RNA POLYMERASE 1 113 IPR012164 GO:0003899|GO:0006351
Vivi4g02870 114 Gene3D - 47 114 - -
Vivi4g02870 114 Pfam Transcription factor S-II (TFIIS) 75 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi4g02870 114 SUPERFAMILY Zinc beta-ribbon 1 48 - -
Vivi4g02870 114 ProSiteProfiles Zinc finger TFIIS-type profile. 72 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi4g02870 114 Pfam RNA polymerases M/15 Kd subunit 4 41 IPR001529 GO:0006351
Vivi4g02870 114 PIRSF RNApol_RpoM 4 114 IPR012164 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02870 Vivi-Chr4 134930488 134932425 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02870 K03017 - csav:115718408 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02870 4 134930488 134932425 Vivi4g02870 4 134930488 134932425 ECH
Vivi4g02870 4 134930488 134932425 Vivi4g02870 4 134930488 134932425 PCT