Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02774 ATGGATGCAGTCACATTCACCGCGGAGTTCACTAGCACGGTTGAGGCCGGGAGGTTGTTCAAGGCTTTGATCCTTGATGCACAAAACCTCATCCCCAAGCTCATGCCAGCGATTAAGAATATTCAACTCGTTGAAGGCAATGGTGGCCCCGGAAGCATTCAACAAATAACTATTGTCGAAGGTACTAGCACCAAACATGTGAAACATAGAATTGATGCAATAGACAAAGAGAATTTCACATATAATTATTCAGTGATCGACGACGAGGGTAAGCCGGAAATCCTTGAATTGGTTTCACATGAGGTCAAGATTGAACCTAGTAAAGAGGGTGGTTGCAAGATCAAGAATGTTAGCAAGTATCATCCCAAAAAAGGAGTTGAGATTAAAGAAGAGGAATTGAAGGCTTCTAGGGAGGAAGCATTGGTTGTTCTCAAAGTAGTTGATGCATATCTTGTTGCAAACCCGGAAGCCTATGCTTGA 480 0.4292 MDAVTFTAEFTSTVEAGRLFKALILDAQNLIPKLMPAIKNIQLVEGNGGPGSIQQITIVEGTSTKHVKHRIDAIDKENFTYNYSVIDDEGKPEILELVSHEVKIEPSKEGGCKIKNVSKYHPKKGVEIKEEELKASREEALVVLKVVDAYLVANPEAYA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02774 159 FunFam Major pollen allergen Bet v 1-A 1 158 - -
Vivi4g02774 159 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vivi4g02774 159 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vivi4g02774 159 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vivi4g02774 159 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vivi4g02774 159 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vivi4g02774 159 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vivi4g02774 159 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vivi4g02774 159 PANTHER - 1 158 - -
Vivi4g02774 159 Pfam Pathogenesis-related protein Bet v 1 family 4 153 IPR000916 GO:0006952
Vivi4g02774 159 CDD Bet_v1-like 5 151 - -
Vivi4g02774 159 SUPERFAMILY Bet v1-like 4 156 - -
Vivi4g02774 159 Gene3D - 3 157 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02774 Vivi-Chr4 132471863 132473175 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02774 - - tpra:123883745 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02774 4 132471863 132473175 Vivi4g02774 4 132471863 132473175 ECH
Vivi1g01086 1 23162357 23163402 Vivi4g02774 4 132471863 132473175 PCT
Vivi4g02774 4 132471863 132473175 Vivi1g01083 1 23130326 23131123 PCT