Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02770 ATGGCGGCTTTGAACAAGGAAATGATGCTGCTCGTGATACAATATCTTGGTGAAGAGAATTTGAAGGAAACCATGCACAAGATGGAGCAAGAATCTGGTCTGTTCTTCAATTTGAAGTATTTTGAAGAGAAGATCCTTGCTGGAGAATTGGATGAAGCTGAGAAGTACCTTGGTGGCTTTACGAGAATCAGTGAAAGCCGTAACTCTATGAAAATGTTCTTCGAGATCAGGAAGCAAAAGTATTTTGAAGCCTTGGACAAGCATGACAAAGCGACGGCGGTTGATATTCTGGTGAAAGATTTGAAAATCTTTTCAACATCTAATGGTGATTTGTACAAAGAAATAACGCATCTCATTACTCTTAACAACTTTAGGGAGAAAGAAGAACTATCACAGTATGGAGATACTAAAGCAACTAGAACCATATTGATGGGAGAGCTCAAAAAACTGATAGACACTAATCCTAGCCTCAAAGACAAGCTTGAGTTTCCTACCATTCAGCCATCGCGGTTGCGACAATTGGTTAATCAAAGTTTGAATTGGCAGCATCAGCTGTGCAGGTTTCCAAGTCCACATCCGGATATTAAAACTTTGTTTACCGACCATTTTTGTTTGGTGCCTCGAATAAATGAACCTTGCTCGCCTACTTTGGCTTTGCGTCCTGCTGCAGATGGTCCGAGTCATCTCTCTTTTGCAGTTGCGCCGCTTCGTCTAGTCCCTACAGCTCCTACTGCTAATTCTGTAGCTGCATGGTTGGCGAATGCAAACCCTTCCTCATCATCTCAATCACCTGCTGCGGTCGCAGGTTCCTCGTTACCTGGTCCATCAAACGGAGTCTCCCTTTTGCAATATTCAAGAACACTACCTAATCTTACACTTGTAGATCACCAAAGTCCCGATCTTGATCCACGAATGAGATTGTTTCCAAATAACAACTCTTTACAGGCCGTGCAGGCCGCATATACCTTTACATCTCCACCAATGCCTAAGTGGTTTGACGAACTTCCTAGAACCGTGTTTTGCAAGTTACATCAGGGATCAACTGTGACAAGCATGGAGTTTCATCCTTCTCGTCATTCGATACTAGCTGTTGGTTGTGTAAATGGTGAAATTTCACTTTGGGAAACAAAGCTGAGAGAGATGATGATAACTAGGCCTTTCAAAATTTGGAAACTTTCTAATTGTTCGGTCCAATTTCAGGCTGCGAGTTTGAAAGAATTGATGATATCCGTCAACCGTGTATCTTGGAGCCCGGACGCGAGTTTTATCGGGATTGCTTTTGCCAAACATTTGGTTCATTTGTATTCGTATCAAGTTCCTAATGGCCTACAGCAACAATTGGAGATCGATGCTCATGATGGCGCGGTTAATGACATAGCTTTTACATGTCCGGAAAATCAGCTATGCATTGTAACATGTGGAGATGATAAACTAATTAAGGTATGGGATTTGGATGGACATAAGATTCATCACTTGGAAGGTCATGTAGCACCTGTTTGTTCGCTTCTTCCTCGCTCGAAGGAAAATATTCAGTTTTTATTTTCGACTTCGGCTGACGGGAAAGTTAGGGCTTGGATGTATGATGACAAGAGTTTCCATCTGGAGTACGACGCTCCCGGAAAATGTCCCACCACACTGATCTACAGTGCTGATGGAACTAGACTGTTTTCTTGCGGAACAAGTAATGACGGAGATATCTTCTTAGTTGAGTGGAATGAAAATGACGGATCGGTAAAAAGAACATATTCTGGACTTACAAACAAAGCTGCCGGTCCTGTGCAATTCGATGCTGCAAAGAATCGGTTTCTGGCTGCTGGTGCAGACAGCCAGATTAAGTTTTGGGATGTGGATAGTACCAATGTTCTGATTGAAATAAATGCTGACGGCGGTCTTTCTAATCTTCCTCGCTTGAAGTTCAATAAAAAAGGAAATCTGCTTGCTGTTAGTACCGCGGATGGTGGTGTTAAAATTCTTGCGAACGCAGACGGTTTCAAATCCATGAGGCACGTCGATGCTTCTGATCCAAAGGGTGGAGTAAATGTTATTATTGCTAGAAACATGGAGATTAACAGAAGCTTTGAAACCATTCACTCTCTTCAGTGTCAAATAGTTACTATGCCGGAGAGAGTGGTTCCGAATAAGAAGGCTATTCGTCTTCTTTACACAAACGATGGAGCTTGTCTTCTAGCTCTTGGTTCAAGAGGGAGTAAGAAGCTGTGGAAATGGACCCCCGATGAATCGAATCCTACGGGAAAGGCGACGGCAAGTGTTGTTCCTGTACATTGGACACCGATTAATGGTATTCGTTTGACTGATGAGTTCCCGACCACTTGTGATTCGTCAACGCCATGTCTAGACATCTCAAAGAATGATAACTATGCCATTGCTTCATATGGAGGAGAAGTTGCATTGTTCAACATGGTGTCTTTTCGGGTTTTGTGTCGTTTTGAGGGACCTCCACCAGCTGCAACGTTTCTCGCGTTTAATCCTCAAGACAATAACATCATCGCAGTTGGAATGGAAAACTCGGAGATTCATATTTTTAATGTTAGGTCCGATGAGCGTGTATCTAAATTGAAGGGTCACTGTAAGTACATTACTGGTATAGCTTTTTCGCTTCGATTGAGTATAATGGTTTCTTCGGGCGCTGATTCTAAGGTTGTGTCATGGTTCACGGGACCATGGTTTAAGAAGAAATCGGTGATACTCCAAATGCCGGGTGGAGGACATGCGCATTTAGGCGAGACTAAAGTTCAATTTCACATTGATCAAACAAAGTTGCTGGTATGCCATGACTCGCAGATAGCAATATATGATGCCTCAAAAATGGAATTGATTCATCAGTGGCCGCCACAAGATGGATTGTCTGGTACTATAACCTCTGCAGCATACAACTGCAATGGACAAATAATTTATGCTACTTTCAGTGATGGGAACATTGGAATATTTGATGCTGAAAATCTCCATCTAAGATATCGGATCGATTCATCTGCATACCTATCTCCATCAAACAGCCAAAATATATACCCTATTGTTGTCGCAGCACATCCAGAAAAGCCATATCAACTTGCAATTGGACTGAATGACGGGTATGTTAAGGTTATTGAGCCTATCAACTCAGCAGGATGGTTGAAACAGAAAGTGTCTGTTGTTAAAATGGATATCGTCTGA 3171 0.4232 MAALNKEMMLLVIQYLGEENLKETMHKMEQESGLFFNLKYFEEKILAGELDEAEKYLGGFTRISESRNSMKMFFEIRKQKYFEALDKHDKATAVDILVKDLKIFSTSNGDLYKEITHLITLNNFREKEELSQYGDTKATRTILMGELKKLIDTNPSLKDKLEFPTIQPSRLRQLVNQSLNWQHQLCRFPSPHPDIKTLFTDHFCLVPRINEPCSPTLALRPAADGPSHLSFAVAPLRLVPTAPTANSVAAWLANANPSSSSQSPAAVAGSSLPGPSNGVSLLQYSRTLPNLTLVDHQSPDLDPRMRLFPNNNSLQAVQAAYTFTSPPMPKWFDELPRTVFCKLHQGSTVTSMEFHPSRHSILAVGCVNGEISLWETKLREMMITRPFKIWKLSNCSVQFQAASLKELMISVNRVSWSPDASFIGIAFAKHLVHLYSYQVPNGLQQQLEIDAHDGAVNDIAFTCPENQLCIVTCGDDKLIKVWDLDGHKIHHLEGHVAPVCSLLPRSKENIQFLFSTSADGKVRAWMYDDKSFHLEYDAPGKCPTTLIYSADGTRLFSCGTSNDGDIFLVEWNENDGSVKRTYSGLTNKAAGPVQFDAAKNRFLAAGADSQIKFWDVDSTNVLIEINADGGLSNLPRLKFNKKGNLLAVSTADGGVKILANADGFKSMRHVDASDPKGGVNVIIARNMEINRSFETIHSLQCQIVTMPERVVPNKKAIRLLYTNDGACLLALGSRGSKKLWKWTPDESNPTGKATASVVPVHWTPINGIRLTDEFPTTCDSSTPCLDISKNDNYAIASYGGEVALFNMVSFRVLCRFEGPPPAATFLAFNPQDNNIIAVGMENSEIHIFNVRSDERVSKLKGHCKYITGIAFSLRLSIMVSSGADSKVVSWFTGPWFKKKSVILQMPGGGHAHLGETKVQFHIDQTKLLVCHDSQIAIYDASKMELIHQWPPQDGLSGTITSAAYNCNGQIIYATFSDGNIGIFDAENLHLRYRIDSSAYLSPSNSQNIYPIVVAAHPEKPYQLAIGLNDGYVKVIEPINSAGWLKQKVSVVKMDIV 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02770 1056 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Vivi4g02770 1056 Pfam WD domain, G-beta repeat 445 483 IPR001680 GO:0005515
Vivi4g02770 1056 SMART Lish 4 36 IPR006594 GO:0005515
Vivi4g02770 1056 Gene3D - 544 679 IPR015943 GO:0005515
Vivi4g02770 1056 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 485 IPR001680 GO:0005515
Vivi4g02770 1056 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Vivi4g02770 1056 ProSiteProfiles Trp-Asp (WD) repeats profile. 859 890 IPR001680 GO:0005515
Vivi4g02770 1056 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vivi4g02770 1056 Gene3D - 901 1039 IPR015943 GO:0005515
Vivi4g02770 1056 Gene3D - 294 533 IPR015943 GO:0005515
Vivi4g02770 1056 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1044 IPR027728 GO:0006355
Vivi4g02770 1056 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Vivi4g02770 1056 Gene3D - 683 900 IPR015943 GO:0005515
Vivi4g02770 1056 SMART WD40_4 618 659 IPR001680 GO:0005515
Vivi4g02770 1056 SMART WD40_4 852 891 IPR001680 GO:0005515
Vivi4g02770 1056 SMART WD40_4 529 570 IPR001680 GO:0005515
Vivi4g02770 1056 SMART WD40_4 442 483 IPR001680 GO:0005515
Vivi4g02770 1056 SMART WD40_4 575 615 IPR001680 GO:0005515
Vivi4g02770 1056 SMART WD40_4 809 849 IPR001680 GO:0005515
Vivi4g02770 1056 SMART WD40_4 485 526 IPR001680 GO:0005515
Vivi4g02770 1056 SMART WD40_4 942 984 IPR001680 GO:0005515
Vivi4g02770 1056 SMART WD40_4 403 436 IPR001680 GO:0005515
Vivi4g02770 1056 SMART WD40_4 898 939 IPR001680 GO:0005515
Vivi4g02770 1056 SMART WD40_4 336 375 IPR001680 GO:0005515
Vivi4g02770 1056 SMART ctlh 34 92 IPR006595 -
Vivi4g02770 1056 SUPERFAMILY WD40 repeat-like 341 657 IPR036322 GO:0005515
Vivi4g02770 1056 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 512 1038 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02770 Vivi-Chr4 132077704 132083669 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02770 - - psat:127073516 1893.24