Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02717 ATGGAGGTAGAACCAGTAGAACCACAATCACTGAAGAAGCTAAGCTTCAAATCCCTCAAACGCGCCCTCGACCTCTTCTCCCCCGTTCACCAACAACTCGTTCCTCCCGATCTCCAAAGCAAGCAAATTCGAATCAGTTACAAGGTAAATGCTGAGTATGGTGGAATTAAAAACACTACTCAACCTCCCCAGCAGACAAAGGATAGCTCTCAACAAGCAGGGTCTTCTAACGCACTTGCTCTAGCAGGTCCTGGAAATCCAGATCTTCAGAAAGGAGAGCCCCAAAAAGCTTTGGTTGTTGGTCCAGCCATGCCATCCACTTCAACGAATGGTCTCGGTTCTCAGGGAAAAAGTACAGTAGTTATTCCTTCCTCTGGCTCATCCGAAAGGAATTTCTCCACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGACCTGTGTGGCATGCACCATGGAAAAACTACAGGGTCATCAGTGGTCACTTAGGATGGGTGAGATCTGTTGCAGTTGATCCCAGTAATACATGGTTTGCCACTGGTTCTGCAGATCGAACTATCAAGATATGGGACCTGGCAAGTGGTGTTCTAAAACTCACATTAACGGGCCACATCGAACAAGTAAGAGGCCTTGCTATTAGCAGCAAACATACGTACATGTTTTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGGTTATTAGGTCTTATCATGGCCATCTTAGTGGTGTTTATTGCTTGGCTATTCATCCTACAATTGACATTTTGCTGACTGGGGGACGTGATTCTGTCTGCCGGGTCTGGGACATACGTAGTAAAATGCAGATTCATGCTCTTTCAGGTCATGAGAACACCGTCTGCTCTGTGTTCACGCGGCCAACGGACCCTCAAGTTGTCACTGGTTCTCATGACTCTACAATCAAGATGTGGGACCTTAGATATGGTAAAACAATGTTAACTCTTACAAACCATAAAAAGTCTGTTCGAGCTATGGCTCCACATCCTAAAGAGCAAGCTTTTGCATCTGCATCGGCTGATAATATTAAAAAGTTCACCCTTCCAAAAGGAGAATTTTGTCACAATATGCTTTCTCAACAGAAAACTATTATCAATGCAATGGCTGTCAATGAGGAGGGTGTTATGGTTACTGGAGGTGACAATGGCAGTATGTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAATCTCAAACAATTGTACAACCTGGTTCACTGGACAGTGAGGCTGGTATCTATGCTTTAACCTATGATGTCACCGGTACAAGGCTTATATCATGCGAAGCCGACAAGACCATAAAAATGTGGAAAGAAGATGACAATGCCACTCCAGAAACACACCCCCTTAACTTCAGGCCTCCCAAAGACATTCGTCGATTCTAG 1425 0.4456 MEVEPVEPQSLKKLSFKSLKRALDLFSPVHQQLVPPDLQSKQIRISYKVNAEYGGIKNTTQPPQQTKDSSQQAGSSNALALAGPGNPDLQKGEPQKALVVGPAMPSTSTNGLGSQGKSTVVIPSSGSSERNFSTSALMERMPSKWPRPVWHAPWKNYRVISGHLGWVRSVAVDPSNTWFATGSADRTIKIWDLASGVLKLTLTGHIEQVRGLAISSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLAIHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHENTVCSVFTRPTDPQVVTGSHDSTIKMWDLRYGKTMLTLTNHKKSVRAMAPHPKEQAFASASADNIKKFTLPKGEFCHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALTYDVTGTRLISCEADKTIKMWKEDDNATPETHPLNFRPPKDIRRF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02717 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 201 IPR001680 GO:0005515
Vivi4g02717 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Vivi4g02717 474 ProSitePatterns Trp-Asp (WD) repeats signature. 263 277 IPR019775 -
Vivi4g02717 474 Gene3D - 139 474 IPR015943 GO:0005515
Vivi4g02717 474 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vivi4g02717 474 PRINTS G protein beta WD-40 repeat signature 305 319 IPR020472 -
Vivi4g02717 474 PRINTS G protein beta WD-40 repeat signature 179 193 IPR020472 -
Vivi4g02717 474 CDD WD40 156 451 - -
Vivi4g02717 474 Pfam WD domain, G-beta repeat 422 451 IPR001680 GO:0005515
Vivi4g02717 474 Pfam WD domain, G-beta repeat 200 234 IPR001680 GO:0005515
Vivi4g02717 474 Pfam WD domain, G-beta repeat 283 318 IPR001680 GO:0005515
Vivi4g02717 474 Pfam WD domain, G-beta repeat 239 276 IPR001680 GO:0005515
Vivi4g02717 474 Pfam WD domain, G-beta repeat 155 192 IPR001680 GO:0005515
Vivi4g02717 474 SUPERFAMILY WD40 repeat-like 149 451 IPR036322 GO:0005515
Vivi4g02717 474 ProSitePatterns Trp-Asp (WD) repeats signature. 305 319 IPR019775 -
Vivi4g02717 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 327 IPR001680 GO:0005515
Vivi4g02717 474 FunFam Putative pleiotropic regulator 1 139 474 - -
Vivi4g02717 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 160 196 - -
Vivi4g02717 474 MobiDBLite consensus disorder prediction 454 474 - -
Vivi4g02717 474 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 9 474 IPR045241 GO:0000398
Vivi4g02717 474 MobiDBLite consensus disorder prediction 54 127 - -
Vivi4g02717 474 SMART WD40_4 413 451 IPR001680 GO:0005515
Vivi4g02717 474 SMART WD40_4 321 359 IPR001680 GO:0005515
Vivi4g02717 474 SMART WD40_4 195 234 IPR001680 GO:0005515
Vivi4g02717 474 SMART WD40_4 153 192 IPR001680 GO:0005515
Vivi4g02717 474 SMART WD40_4 237 276 IPR001680 GO:0005515
Vivi4g02717 474 SMART WD40_4 363 401 IPR001680 GO:0005515
Vivi4g02717 474 SMART WD40_4 279 318 IPR001680 GO:0005515
Vivi4g02717 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
Vivi4g02717 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 239 - -
Vivi4g02717 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 320 - -
Vivi4g02717 474 MobiDBLite consensus disorder prediction 102 127 - -
Vivi4g02717 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 279 - -
Vivi4g02717 474 MobiDBLite consensus disorder prediction 54 79 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02717 241 450 Miscellaneous Gene Families AT5G08390 30.093 2.35e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02717 K12862 - gmx:100782357 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02717 4 129288081 129295770 Vivi4g02717 4 129288081 129295770 ECH