Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02454 ATGATCTCTATCTTCTTCACAAACTCTCATATCCAAAACCTTTCATTCTCATCCTCACTCTCACTTCTCATCTCTAACCCCCATTCATCAATGGAAGGTACCCTCTTCCCCAATAGACCCGTTCTTCCACCCCCCACAAAAAAACCAACCCATCCATTGAAATTCAAACCAACTACATTTTCTAACTCACCAACACCAACACCACCAACACCTATTTCCTCCCATTTAGATTCTCTTCTTCACCATCTCAAACACCTCTCTTCAACCCCTATCACCACTCACACACAAACACTTGTCCCTTTAAACAATCCCAACAACAATACCCAATTCTCTTCTCTTGAATTTTCTACTGATGAAAACGAGGAGAATCTTCAACAGGGTAATGGAAAGCGACCCACTTCGGCTTCTGTTGAGATTAACCGGTTTGACAATGCAAAGTTTGGATTTTTATCGGAGAAAGGTAAGAATATGCTCAATTCAATTGTTGGGTCGAGTTTGAATGACTTGATTGAGTTTTTCAACTTTGTGAAACCTGAGTTGCTTGAATCTGATGTTACTAGTTTGTTGAGGGGTTTGGACCTTTCTGGGAATTGGGAAAGAGCGTTTTTGTTGTTTGAGTGGGTTTGGTTGAATTTTGGGTCTGAAAATGTGAAAGTGGATAATCAATCTGTTGAACTTATAGTTAAGCTATTGGGTAGGGAGTCACAGTATTCAATTGCATCTAAGCTGTTTGATATAATTCCTGTTGAGGAATATTCACTTGATGTTAAGGCTTGCACTACTGTTCTTCATGCTTATGCTCGAACCGGGAAGTATAAACGGGCTATTGAGATCTTTGAGAAGATGAAGCAGACTGGTTTTGATCCAACTTTGGTTACTTACAATGTTATGCTTTATGTATATGGAAAAATGGGGCGGTCTTGGAATGTAATTTTGGAGTTGTTGGATGAGATGAAGAGTAAAGGGCTTGAGTTTGATGAGTTTACGTGTAGCACTGTGATATCGGCTTGTGGGAGAGAGGGTATGCTTGATGAAGCAAGGAAGTTTTTTGCTGATTTGAAATCGAGTGGATATAAACCTGGAACCGTTGTGTATAACGCTATGCTGCAGGTTTTCGGGAAGGCTGGAGTTTATGTAGAGGCTTTGAACATCTTGAAAGAAATGGAGGATAATCACTGTGTGCTAGATGCCATTACTTATAACGAGCTTGTGGCAACCTATGTAAGAGCCGGGTTTCATGACGAGGGTGCTGCTGTCATTGATACAATGGCAAGCAGAGGAGTTATGCCGGATGCTATAACTTACACCACTATAATAAACGGCTACCGTAAATTGGGAAACGAGGACAAGGCTTTAAAGGTGTTTGGTCGAATGAAGGAGTTGGGCTGTGTTCCGAACATAAGCACATACAATTCTGTTCTTGCAATGCTAGGCAAAATGTCGAGACCAGAAGACATGATTAATCTTCTCCGTGAAATGAAATTGAATGGATGTCCTCCTGATCGTATAACGTGGAACACGATGCTTGCTGTATGTGGTGCGAAGGGTAAGCAAAAATATGTTAACCAGGTTTTAAGGGAAATGAAAATTTCTGGATTTGAGCCTAACAAAGACACGTTCAATACATTAATTAGTACCTATGGACGGTGTGGATCTGAAGTTGATGTTGCCAAAATGTACGGCGAAATGATTACGGCAGGCTTTACTCCATGCCTAACCACATACAATGCTCTTCTTAACGCACTTGCTAGGCGGGGTGATTGGAAAGCGGCAGAGTCTATCATTTCTGACATGCAGAATAAGGGCTTTAAGCCGAACAAAACTTCGTACTCGCTTTTGCTTCATTGTTACTCTAACGCTGGGAATGTCAGGGGATTAGAGAAGGTCGAGAAGGAAATCTACGACGGTCATGTCTTTCCTAGTTGGATGCTTTTGAGAGCCCTTGTCCTGTCAAACTACAAATGTAAACAGCTTCGAGCAATGGAAAGGGCATTTTATCAGTTGCTAGAGAATGGATACAAACTCGATATGGTTGTAATAAACTCTATGCTCTCAATGTTTGTCCGAAACAAGAGACTCGAGAAGGCACACGAAATGCTAGACATCATTCGCGAAAGCGGGTTGCAGCCGAATCTTGTGACCTATAACAGCTTGATAGACTTGTATGCCCGAGTCGGTGATTGTTGGAAAGCAGAAGAAATGCTCAAGGAAATTAAAAACTCCGGTATAAATCCAGACGTTGTGTCTTATAACACCGTCATCAAGGGCTTTTGTAAAAAAGGGCTCGTACAAGAAGCGATAAGAACTCTTTCTGAGATGACCAATAACGGAATTCAACCATGTCCTTTTACATTCAATACTTTCTTGTCATGTTATGCAGGGAGGGGACTGTTTGCTGAAGCAGATGAAGTAATTAGATATATGATCAAACATTGTTGCAAGCCTAATGAGTTAACTTACAAGATTGTAATTGATGGTTATATTAGAGAGAAAAAGCATAAGGAAGCAATGGATTTTGTGTCTAGGATCAAAGAGATTGATATCTCTTTTGATGAGCAATCTTTGAAAAAGCTAGCTTCTTGTATTAGGGAGAGTTTGGGGTCTTAA 2607 0.4066 MISIFFTNSHIQNLSFSSSLSLLISNPHSSMEGTLFPNRPVLPPPTKKPTHPLKFKPTTFSNSPTPTPPTPISSHLDSLLHHLKHLSSTPITTHTQTLVPLNNPNNNTQFSSLEFSTDENEENLQQGNGKRPTSASVEINRFDNAKFGFLSEKGKNMLNSIVGSSLNDLIEFFNFVKPELLESDVTSLLRGLDLSGNWERAFLLFEWVWLNFGSENVKVDNQSVELIVKLLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKQTGFDPTLVTYNVMLYVYGKMGRSWNVILELLDEMKSKGLEFDEFTCSTVISACGREGMLDEARKFFADLKSSGYKPGTVVYNAMLQVFGKAGVYVEALNILKEMEDNHCVLDAITYNELVATYVRAGFHDEGAAVIDTMASRGVMPDAITYTTIINGYRKLGNEDKALKVFGRMKELGCVPNISTYNSVLAMLGKMSRPEDMINLLREMKLNGCPPDRITWNTMLAVCGAKGKQKYVNQVLREMKISGFEPNKDTFNTLISTYGRCGSEVDVAKMYGEMITAGFTPCLTTYNALLNALARRGDWKAAESIISDMQNKGFKPNKTSYSLLLHCYSNAGNVRGLEKVEKEIYDGHVFPSWMLLRALVLSNYKCKQLRAMERAFYQLLENGYKLDMVVINSMLSMFVRNKRLEKAHEMLDIIRESGLQPNLVTYNSLIDLYARVGDCWKAEEMLKEIKNSGINPDVVSYNTVIKGFCKKGLVQEAIRTLSEMTNNGIQPCPFTFNTFLSCYAGRGLFAEADEVIRYMIKHCCKPNELTYKIVIDGYIREKKHKEAMDFVSRIKEIDISFDEQSLKKLASCIRESLGS 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 746 780 IPR002885 -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Vivi4g02454 868 Gene3D Tetratricopeptide repeat domain 641 747 IPR011990 GO:0005515
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 363 397 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 678 711 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 398 432 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 783 817 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 713 747 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 539 570 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 433 467 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 574 606 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 328 361 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 748 780 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 292 326 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 258 290 IPR002885 -
Vivi4g02454 868 NCBIfam pentatricopeptide repeat 469 501 IPR002885 -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 325 IPR002885 -
Vivi4g02454 868 MobiDBLite consensus disorder prediction 97 134 - -
Vivi4g02454 868 Gene3D Tetratricopeptide repeat domain 748 866 IPR011990 GO:0005515
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Vivi4g02454 868 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 521 678 - -
Vivi4g02454 868 Pfam Pentatricopeptide repeat domain 314 374 IPR002885 -
Vivi4g02454 868 Pfam Pentatricopeptide repeat domain 489 548 IPR002885 -
Vivi4g02454 868 Pfam Pentatricopeptide repeat domain 419 480 IPR002885 -
Vivi4g02454 868 Pfam Pentatricopeptide repeat domain 254 304 IPR002885 -
Vivi4g02454 868 Pfam PPR repeat 819 846 IPR002885 -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 711 745 IPR002885 -
Vivi4g02454 868 SUPERFAMILY HCP-like 265 462 - -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Vivi4g02454 868 Gene3D Tetratricopeptide repeat domain 158 307 IPR011990 GO:0005515
Vivi4g02454 868 Gene3D Tetratricopeptide repeat domain 308 389 IPR011990 GO:0005515
Vivi4g02454 868 Gene3D Tetratricopeptide repeat domain 390 458 IPR011990 GO:0005515
Vivi4g02454 868 Gene3D Tetratricopeptide repeat domain 459 530 IPR011990 GO:0005515
Vivi4g02454 868 Gene3D Tetratricopeptide repeat domain 531 635 IPR011990 GO:0005515
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 781 815 IPR002885 -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 816 850 IPR002885 -
Vivi4g02454 868 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 306 408 - -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Vivi4g02454 868 Pfam PPR repeat family 676 723 IPR002885 -
Vivi4g02454 868 Pfam PPR repeat family 570 617 IPR002885 -
Vivi4g02454 868 Pfam PPR repeat family 745 792 IPR002885 -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Vivi4g02454 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02454 Vivi-Chr4 120502426 120505164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02454 341 853 Glycosyltransferase AT1G05670 23.679 1.31e-46 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02454 K17710 - gmx:100806053 1137.09