Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02451 ATGGAACAACCTCCCTTAGACCCTCCGGCCAACGCCACCGGCGAAAACATAAGCAAAAATGCACTGAAACGTGAACTCAAGAACAAGCAGAGAGAAGAGGCTTTGAAGAAAAAAGAAGAGGAGAAAGCTAGAAAGGCTCTTGAAACACTAAGTGTCAAAGAGAACAAACCTGCGGCTGCTGATGATGAAGATATGGATCCAACGCAATACCTGGAGAATAGGCTAAAGCATTTTGCGACTGAAAAAGCAGAAGGGAGAAACCCGTATCCACACAAATTCCATGTCACTGTGTCTATTGAACAATATATCAAGGAATATGAAGGTTTAAGCGACGGGCAACACCTTGAGGATGTTTCTGTGTCTTTGGCTGGCCGAATCATGCACAAACGTGCCTCTGGTGCAAAGCTTGTCTTTTATGACCTGCATGGTGGTGGTTTTAAGGTTCAGGTTATGGCTGATGCAAGAAAATCGGACTTGAATGAGGCTGAGTTTTCCAAATTCCATTCTAATGTTAAGCGTGGTGATATTGTTGGCATCACAGGGTTTCCAGGCAAAAGCAAGAAGGGAGAGCTTAGTATTTTCCCCAAAACTTTTGTGGCACTGTCTCATTGTTTGCATATGATGCCAAGACAGAAATCTGCAGCTGCCGCTGATAATTCAAATGTGAAGAAAAATGCATGGGTACCAGGAAGTACCAGGAATCCTGAAGCTTACATTTTGAAAGATCAGGAAACTAGATATCGGTTACGCCATTTGGATTTGATGATTAATCCAGAGGTTCGAGAAATATTCAAGACTAGGTCTAAAATCATTTCTTACATTAGGTCGTTCCTGGACAAGCTTGATTTCTTAGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGTGCTGCTGCTAAGCCATTTGTAACTCATCATAACGACCTTAACATGAGATTATTCATGAGAATTGCTCCAGAACTCTATCTCAAGGAGTTGGTTGTAGGTGGGCTTGACCGTGTTTATGAAATTGGGAAGCAATTTAGGAATGAGGGTATAGATTTGACTCACAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCTTATATGGACTACAATGACGTAATGGAGATAACTGAGAACATGTTGAGTGGTATGGTCAAGGAACTTACAAATGGCAGCTACAAAATCAAGTATCATGCAAACGGGATTGATAAAGATCCTATTGAAATTGACTTTACTCCACCATTCAGAAGGATTGACATGATTGAAGGATTAGAGCAGATTGCTGGCCTCAGTATTCCCAAAGACTTGGCAAGTGAGGAAACTAATCAATATCTGAAGAATGCCTGCTTGAAGTACGAAATCAAATGTCCCCCTCCTGAAACAACTACTCGCTTGTTGGATAAGCTTGTCGGGCACTTTTTGGAGGAAACATGTGTCAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCGTTGGCTAAGTGGCACAGATCAAAACCTGGCTTGACAGAACGTTTTGAGTTGTTTGTTAACAAACATGAGATATGCAATGCGTATACTGAATTGAATGACCCTGTGGTACAACGACAAAGATTTGCTGAGCAACTCAAGGATCGGCAATCAGGTGATGATGAAGCAATGGCCTTAGACGAGACATTTTGTACCGCTTTGGAGTATGGTTTGCCACCAACCGGTGGTTGGGGTTTGGGTATTGATAGGTTGACCATGTTATTGACCGACTCCCAAAATATTAAGGAGGTTCTTCTCTTCCCTGCAATGAAACCTCAAGATTGA 1791 0.4182 MEQPPLDPPANATGENISKNALKRELKNKQREEALKKKEEEKARKALETLSVKENKPAAADDEDMDPTQYLENRLKHFATEKAEGRNPYPHKFHVTVSIEQYIKEYEGLSDGQHLEDVSVSLAGRIMHKRASGAKLVFYDLHGGGFKVQVMADARKSDLNEAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVALSHCLHMMPRQKSAAAADNSNVKKNAWVPGSTRNPEAYILKDQETRYRLRHLDLMINPEVREIFKTRSKIISYIRSFLDKLDFLEVETPMMNMIAGGAAAKPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDVMEITENMLSGMVKELTNGSYKIKYHANGIDKDPIEIDFTPPFRRIDMIEGLEQIAGLSIPKDLASEETNQYLKNACLKYEIKCPPPETTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFVNKHEICNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02451 596 PRINTS Lysyl-tRNA synthetase signature 279 289 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vivi4g02451 596 PRINTS Lysyl-tRNA synthetase signature 295 311 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vivi4g02451 596 PRINTS Lysyl-tRNA synthetase signature 324 337 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vivi4g02451 596 PRINTS Lysyl-tRNA synthetase signature 477 493 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vivi4g02451 596 PRINTS Lysyl-tRNA synthetase signature 342 359 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vivi4g02451 596 Gene3D Bira Bifunctional Protein; Domain 2 238 596 IPR045864 -
Vivi4g02451 596 PIRSF LysRS2 9 596 IPR034762 GO:0004824|GO:0005524|GO:0006430
Vivi4g02451 596 Pfam tRNA synthetases class II (D, K and N) 242 592 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vivi4g02451 596 NCBIfam lysine--tRNA ligase 234 595 IPR002313 GO:0004824|GO:0005524|GO:0006430
Vivi4g02451 596 CDD LysRS_N 119 254 IPR044136 GO:0000166
Vivi4g02451 596 Hamap Lysine--tRNA ligase [lysS]. 73 595 IPR002313 GO:0004824|GO:0005524|GO:0006430
Vivi4g02451 596 MobiDBLite consensus disorder prediction 20 67 - -
Vivi4g02451 596 FunFam Lysine--tRNA ligase 67 210 - -
Vivi4g02451 596 FunFam Lysine--tRNA ligase 238 596 - -
Vivi4g02451 596 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 264 594 IPR006195 -
Vivi4g02451 596 Coils Coil 19 56 - -
Vivi4g02451 596 PANTHER LYSYL-TRNA SYNTHETASE 15 596 - -
Vivi4g02451 596 Pfam OB-fold nucleic acid binding domain 120 195 IPR004365 GO:0003676
Vivi4g02451 596 CDD LysRS_core 257 594 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vivi4g02451 596 Gene3D - 61 209 IPR012340 -
Vivi4g02451 596 MobiDBLite consensus disorder prediction 1 67 - -
Vivi4g02451 596 SUPERFAMILY Class II aaRS and biotin synthetases 242 593 IPR045864 -
Vivi4g02451 596 SUPERFAMILY Nucleic acid-binding proteins 65 209 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02451 Vivi-Chr4 120348307 120360647 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02451 K04567 - gmx:100785660 1076.23