Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02406 ATGTTGTTCCCCTCATCAAAACCCTTCTCATCTTCACTCCAAACCTCCCTCAAACGTGGATTCACTCCCACTCCAAATTCAATCAACACCTTCTTCCATTTCCTCTTCAATCTCCGCAAATTCAACCTAATCATCAACCTCTTCCATCAATTCACCCACAACAAACTCCCAATCACTCCAAAAACCCAAACTTTCTTCACATGGGCACTTCTCAACACTCACAGTTTCGAACAAGCCGAACGATTCATGAAGAAAAATCCACACACCCCATCTCGCGCGTGGGACGCGCTTATCCGTCGTCTATGCTCCACGCGCCAGGAAGAACCAGAAAGGGTTCTCTCAGTTCTGAAACATTGTTTGGTAAGCCGTGGTGTTTTTATCTCTTCCTCCGTTTTTTGTTGTGTAATTCAAAAACTTTGTTACATGGGTCATGTGGGTAAGGCTATTGAGGTTCTTGAATTGATGGCTGAGCATAGAAAGGAATACCCTTTTGATGATTTTGTTTGTAGTTCGGTGATTTCGGCTTTTTGTAGGGTTGGGAAACCGGAGCTTTCGCTGTGGTTTTTCGATAATGTTGTGTCGTGGCGGCCGAATTTGGTGACTTGTACTGCTATTGTGAATGCTCTTTGTAAGATGGGGAGGGTTGATGAGGTTTGTGAGTTCGTTAAGAAAATGGAGGAAGATGGGTTGGGTTTGGATGTTGTTTTGTATAGTGTTTGGGTTTGTGGGTATGTTGAAGAAAAGGTTTTGGATGAGGTTTTTAGGAAGATGAGAGAGATGGTGGAAAAGGGTATAGATCATGATTTTGTTAGTTATACTATACTCATTGATGGGTTTTCTAAGTTAGGTGATGTTGAAAAGTCTTTTACTTTTTTGGCTAAGATGATTAAAGAAGGGATTAGACCTAATAAGGTTACTTATACTGCAATAATGTCTGCGTATTGTAAGAAGGGTAAAGTAGAGGAAGCGTTTGGGGTTTTCAATACGATGAAAGATATGGGAATTGAGTTGGATGAATTCGTGTTTGTGGTTTTGATTGATGGATTTGGAAGGATGGGTGGTTTCGATCGGGTGTTTCAACTTTTTGATGAAATGGAGAAGAGAGGGATTAGTCCTAGTGTTGTTACGTATAATGCTGTTGTGAAGGGTTTGTCGAAGTTTGGGAGGACACAAGAGGCGGATGAGTTTTCGAAAAATGTGACTGCGGATGTGATTACGTACAGCACGTTGTTGCATGGGTATACAGAAGAAGAGAACATTTTGGGGATTTTGCAAACAAAGAAGCGGTTGGAAGAAGCTGGTATCTCCATGGATGTTGTAATGTGTAATGTATTGATTAGAGCATTGTTTATGATGGGGGCTTTTGAAGATGTTTATGCACTTTACAAAGGAATGCCGGAAATGGATTTGGTTCCGAATTCTGTTACTTATTGCACAATGATTGATGGGTATTGCAAGGTTGGTAGAATTGATGAGGCGCTTGAGGTATTTGATGACTTCAGAAACACATCGATATCTTCAAATGAATGCTACAATAGTATCATCAATGGCCTTTGCAAGAAGGGTATGGTAGAAATGGCCATTGAAGCATTGCTTGAACTCAATCACAAATGTCTCGTGTTGGATACAGGTACATATAGGTTGTTGATGAAGACAATTTTCAAAGAAAACGATTCAAAAATGGTTTTAGATTTAGTCTGCAGAATGGAAGGTTTAGGGCCAGATATATATGATGCAATATGTAATGATTCCATATATTTATTATGTAAAAGAGGATTGCTCACTGATGCGAATCAGTTGTGCGTTGCGATGAAAAAGAAAGGATTACCTGTCACATGCAAGTCTTATTATTCACTTTTGAGAAGGCTTCTTTGTGTTGTTGGGAAAAAGGAGCAAATTCTGCCCCTTCTGAATTGCTTTCTGAAAGAGTACGGTCTAGTCGAACCAAAGGTTCAAAAGTTACTCGCACGATACCTTTGTCTGAAAGATGTCGATGTCGCCCTTCAATTTCTTAGAAAAACAGTGGACAATTCTTCAGCAATCACCTTTCCTGTCTCCATTCTCAAGATTCTCATAAAGGAGGGTAGAGCTTTAGATGCATATAAGCTTCTCATCGGGATTCAAGATGATTTACCAATCATGTATGTTGATTATGCCATCGTGATCCATGGCTTATGCAAGGGAGGGTATCTCAATAAAGCGTTGGATCTTTGTGCCTTTATTGAAAAGAAAGGGATGAATTTGAACATAGTCGTATATAATTCAATAATAAACGGATTGTGCCATGAGGGTTGTCTTATTGAAGCGTTTCGGCTATTTGATTCTTTAGAGAAACTTAATTTGATGACCTCTGAAATAACTTACGCGACATTAATTTATGCGTTATGTAGAGAGGGATATTTGCCAGACGCAGAGCATGTTTTCACGAAAATGGTCAGTTGCGGGTTTCAACCAAAAACACAAGTTTACAATTCGTTACTCGATGCTATATCTAAGTTTGGACAATTAGAGAAGGCGTATGAGCTTCTTAACGATATGGAGAAAAAATATGTCGAGTTTGACAATTTTACAGTAAGCGCTGTAATAAATTGCTATTGTCAAAAGGGTGACATGGAAGGAGGTCTTGAATTCTATTATAAGTTCAAGGGAAAAGATATATTACCCGATTTTTTAGGGTTCTTGTATTTGATTAGAGGTCTGTGCACCAAGGGAAGGATGGAAGAAGCAAGGAGTGTCTTGAGAGAAATGCTCCAATTCGAGAATGTTACCAAGATGATTAATATTGTCAACAACGAGGTTGATACCGAGTCAATAAGTGATTTTCTCGCCACTTTGTGTGAGCAAGGAAGCATTCAAGAAGCTGTAGCAGTTCTCAATGAAATTGCACGCGTGTATTTTCCTGTCCAAAAGTCTACTTATAATCAAGGATCCGATAAATCACAGAAGAATTATGAATCAAAATGTTTTGGTTTTAAATCTTCGACCTCTCCACCTTCATCTTGCAAAAGTGGTTTAGATTTTGATTTCTATTATTCTCGAATTGCTGCACTTTGCACCAAAGGGGAGTTGCAGGATGCTAATCAATTAGCAAAGGAAATGCTTTCTGACATGGCAGAGCCTATGAACTGA 3129 0.3918 MLFPSSKPFSSSLQTSLKRGFTPTPNSINTFFHFLFNLRKFNLIINLFHQFTHNKLPITPKTQTFFTWALLNTHSFEQAERFMKKNPHTPSRAWDALIRRLCSTRQEEPERVLSVLKHCLVSRGVFISSSVFCCVIQKLCYMGHVGKAIEVLELMAEHRKEYPFDDFVCSSVISAFCRVGKPELSLWFFDNVVSWRPNLVTCTAIVNALCKMGRVDEVCEFVKKMEEDGLGLDVVLYSVWVCGYVEEKVLDEVFRKMREMVEKGIDHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIRPNKVTYTAIMSAYCKKGKVEEAFGVFNTMKDMGIELDEFVFVVLIDGFGRMGGFDRVFQLFDEMEKRGISPSVVTYNAVVKGLSKFGRTQEADEFSKNVTADVITYSTLLHGYTEEENILGILQTKKRLEEAGISMDVVMCNVLIRALFMMGAFEDVYALYKGMPEMDLVPNSVTYCTMIDGYCKVGRIDEALEVFDDFRNTSISSNECYNSIINGLCKKGMVEMAIEALLELNHKCLVLDTGTYRLLMKTIFKENDSKMVLDLVCRMEGLGPDIYDAICNDSIYLLCKRGLLTDANQLCVAMKKKGLPVTCKSYYSLLRRLLCVVGKKEQILPLLNCFLKEYGLVEPKVQKLLARYLCLKDVDVALQFLRKTVDNSSAITFPVSILKILIKEGRALDAYKLLIGIQDDLPIMYVDYAIVIHGLCKGGYLNKALDLCAFIEKKGMNLNIVVYNSIINGLCHEGCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLPDAEHVFTKMVSCGFQPKTQVYNSLLDAISKFGQLEKAYELLNDMEKKYVEFDNFTVSAVINCYCQKGDMEGGLEFYYKFKGKDILPDFLGFLYLIRGLCTKGRMEEARSVLREMLQFENVTKMINIVNNEVDTESISDFLATLCEQGSIQEAVAVLNEIARVYFPVQKSTYNQGSDKSQKNYESKCFGFKSSTSPPSSCKSGLDFDFYYSRIAALCTKGELQDANQLAKEMLSDMAEPMN 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 751 778 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 475 508 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 896 918 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 270 303 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 341 374 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 440 473 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 200 233 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 510 534 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 822 848 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 305 339 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 786 818 IPR002885 -
Vivi4g02406 1042 NCBIfam pentatricopeptide repeat 857 889 IPR002885 -
Vivi4g02406 1042 Gene3D Tetratricopeptide repeat domain 712 832 IPR011990 GO:0005515
Vivi4g02406 1042 Gene3D Tetratricopeptide repeat domain 159 230 IPR011990 GO:0005515
Vivi4g02406 1042 Gene3D Tetratricopeptide repeat domain 356 398 IPR011990 GO:0005515
Vivi4g02406 1042 Gene3D Tetratricopeptide repeat domain 399 507 IPR011990 GO:0005515
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat 235 265 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat 375 395 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat 896 918 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat 270 300 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat 510 533 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat 168 190 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat 200 230 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat 718 745 IPR002885 -
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 819 853 IPR002885 -
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 749 783 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat family 818 867 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat family 749 797 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat family 302 349 IPR002885 -
Vivi4g02406 1042 Gene3D Tetratricopeptide repeat domain 834 1001 IPR011990 GO:0005515
Vivi4g02406 1042 Gene3D Tetratricopeptide repeat domain 533 680 IPR011990 GO:0005515
Vivi4g02406 1042 Gene3D Tetratricopeptide repeat domain 11 158 IPR011990 GO:0005515
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 854 888 IPR002885 -
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 784 818 IPR002885 -
Vivi4g02406 1042 PANTHER ATPASE EXPRESSION PROTEIN 3 834 1036 - -
Vivi4g02406 1042 Pfam Pentatricopeptide repeat domain 398 448 IPR002885 -
Vivi4g02406 1042 Pfam PPR repeat 469 499 IPR002885 -
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 889 923 IPR002885 -
Vivi4g02406 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Vivi4g02406 1042 Gene3D Tetratricopeptide repeat domain 243 355 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02406 582 987 Glycosyltransferase AT1G05670 24.318 1.20e-31 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02406 - K17964 gmx:100783405 1504.19