Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02254 ATGGAAACTCCTCCGTCGCAGCAAGGCGTAGTAAAGAAGAAGGAAACACGCGGTCGAAAACCCAAACCCAAAGACGATCAACACCAACAAACACCCGCCAAGGCTCTGAAAGAATCGAAAAAGGCGCAACTACAACAGCAGCAACAACAGCAACAGCAGCAACAACAGCAACAGCAGCAACACCAAGCTTCCGTAGACGAGAAATACACTCAATGGAAGTCTCTCGTTCCCGTTCTCTACGACTGGCTCGCGAATCATAACCTCGTTTGGCCTTCTCTCTCTTGCAGGTGGGGTCCTCAGCTTGAACAAGCTACTTATAAGAATCGGCAGCGGCTCTATCTTTCTGAGCAGACGGATGGTAGTGTTCCGAATACGTTGGTGATTGCGAATTGCGAGGTTGTGAAAACTAGGGTTGCAGCTGCAGAGCATATTTCACAGTTTAATGAAGAGGCTCGCTCTCCATTTGTGAAGAAGTACAAGACCATCATACATCCGGGCGAGGTGAACAGAATTAGGGAATTGCCGCAAAATTCTAAGATAGTGGCTACTCACACAGACAGCCCTGATGTTCTTATTTGGGATGTTGAAAGTCAACCTAACCGTCACGCTGTCCTTGGAGCTACAAACTCTCGTCCAGATTTGATATTGACAGGACACCAAGACAATGCTGAGTTTGCTCTTGCAATGTGCCCAACTGAGCCTTATGTCCTTTCAGGAGGAAAAGATAAAACAGTGGTGTTGTGGAGTATTGAAGACCATGTAACATCGGCCACCACAGACAAGTCTGGTGGATCTATTATCAAGCCGAACTCTAAATCTGGGGAAGGCAATGACAAAACTGTTGATAGCCCTTCTGTCGGGCCAAGAGGTATCTACTCTGGGCACGATGATACTGTTGAAGATGTAGCCTTTTGCCCTTCTAGTGCGCAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATTTTATGGGATGCACGTGTTGGCTCTAGTCCTGTTGTTAAGGTTGAAAAAGCTCACAATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGATAATCTAATTCTTACTGGGTCGGCAGATAATTCTGTTCGCTTGTTTGATCGGCGCAGTCTCACCTCTAATGGGGTTGGGTCTCCTATCCATAAGTTTGAGGCTCATAAAGCCGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCAGAAGACGGTCTCTTAAACATTTGGGATTATGAGAAGGTTGGTAAAAAGATAGAGCGAGCTGGTAAAACAATAAACTCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTTGTTGACTTCCACTGGAATGCATATGATCCATGGACAATTGTAAGTGTGTCTGATGATTGTGAAAGCACTGGTGGAGGGGGAACGTTGCAGATATGGCGTATGAGTGATTTGCTCTATAGACCAGAGGATGAGGTTTTGGCAGAGTTGGAGAAATTCAAATCTCACGTGGTGGCTTGTGCTGCAAAAACCGATGCATAA 1551 0.4578 METPPSQQGVVKKKETRGRKPKPKDDQHQQTPAKALKESKKAQLQQQQQQQQQQQQQQQQHQASVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSATTDKSGGSIIKPNSKSGEGNDKTVDSPSVGPRGIYSGHDDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRLFDRRSLTSNGVGSPIHKFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLAELEKFKSHVVACAAKTDA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02254 516 PANTHER WD40 REPEAT FAMILY 57 499 - -
Vivi4g02254 516 Pfam WD domain, G-beta repeat 214 249 IPR001680 GO:0005515
Vivi4g02254 516 Pfam WD domain, G-beta repeat 338 370 IPR001680 GO:0005515
Vivi4g02254 516 Pfam WD domain, G-beta repeat 290 325 IPR001680 GO:0005515
Vivi4g02254 516 Pfam WD domain, G-beta repeat 380 419 IPR001680 GO:0005515
Vivi4g02254 516 SUPERFAMILY WD40 repeat-like 154 510 IPR036322 GO:0005515
Vivi4g02254 516 Gene3D - 41 502 IPR015943 GO:0005515
Vivi4g02254 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 334 IPR001680 GO:0005515
Vivi4g02254 516 MobiDBLite consensus disorder prediction 1 59 - -
Vivi4g02254 516 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 67 133 IPR022052 -
Vivi4g02254 516 MobiDBLite consensus disorder prediction 258 292 - -
Vivi4g02254 516 SMART WD40_4 285 325 IPR001680 GO:0005515
Vivi4g02254 516 SMART WD40_4 155 194 IPR001680 GO:0005515
Vivi4g02254 516 SMART WD40_4 379 419 IPR001680 GO:0005515
Vivi4g02254 516 SMART WD40_4 437 484 IPR001680 GO:0005515
Vivi4g02254 516 SMART WD40_4 330 370 IPR001680 GO:0005515
Vivi4g02254 516 SMART WD40_4 209 249 IPR001680 GO:0005515
Vivi4g02254 516 MobiDBLite consensus disorder prediction 258 280 - -
Vivi4g02254 516 FunFam WD-40 repeat-containing protein MSI4 41 502 - -
Vivi4g02254 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 386 421 - -
Vivi4g02254 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 370 - -
Vivi4g02254 516 MobiDBLite consensus disorder prediction 19 35 - -
Vivi4g02254 516 Coils Coil 33 64 - -
Vivi4g02254 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 386 421 IPR001680 GO:0005515
Vivi4g02254 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 370 IPR001680 GO:0005515
Vivi4g02254 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 258 IPR001680 GO:0005515
Vivi4g02254 516 MobiDBLite consensus disorder prediction 40 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02254 Vivi-Chr4 111224683 111232545 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02254 K10752 - gmx:100779302 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02254 4 111224683 111232545 Vivi4g02254 4 111224683 111232545 ECH