Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02201 ATGGCGAGGTTACTTCGAAACGCCAACACTTTTCTCTTCAACCGCTCTCTCTTCAACCACGGTCTTCCGACGCGCTCTTGTTTCAAACATGGAGTAGTGGGCACATCTCAAAATTTGAGCTTTTCAACTAGTAAAGGTAAGAAGCGCTCTAAATCAGATGGGAGTGACTCAAATGACGAGAGCATGTCTAAGAAAGATTTGGCATTACAACAAGCCATGGATCAGATCACATCTACATTTGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTCTCACCTAAAAATGTACCTGTGGTGTCAACGGGTTCTTTTGCTCTTGATATAGCGCTAGGAATATATGGTCTTCCAAAGGGACGTGTTGTGGAAATATTCGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAGGCACAAAAACAAGGAGGCTATTGTGCCTTTATTGATGCTGAGCACGCACTTGATAAGTCACTTGCCGAATCTATTGGCGTAAATACCGAGAACTTGCTACTCTCACAGCCAGATTGTGGTGAGCAGGCACTTAGCCTTGTGGATACCTTAATTCGGAGTGGTTCGCTTGATGTAATTGTCGTCGATAGCGTGGCTGCTCTTGTTCCTAAAGGCGAGCTTGACGGTGAGATGGGTGATGCTCACATGGCAATGCAAGCTAGGCTGATGAGTCAGGCTCTTCGGAAACTGTGCCACTCCTTATCACTTTCACAGTGTATATTGATTTTTATAAACCAGGTAAGGTCAAAGATTTCTACGTTTGGGGGTTTCGCCGGGCCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAGTTCTATGCGTCCGTGAGGCTAAATATCAAAAGAGTAGGGTTTATCAAGAAGGGCGAAGAGACTTTAGGAAGCCAGATTCTTGTCAAAGTTGTGAAGAACAAACACGCCCCTCCGTTTAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGGATATGCAAAGAAGCAGAGGTGATAGAGTTGAGCATAAAACACAAACTCATAAAAAAGAGCGGTTCGTTTTACGAATATAATGGCAAGAATTTCCATGGCAAGGAAGCTCTAAAAAATCACCTGATCAGCAGTGACGGTGTGCAAGTATTAACAACAAAGCTGAGGGAAAAACTTCTCAATGCTGACACGGAAGCAGTTTCAGATTCGGAGTTGATAGTTGGAGACGTCCCGGAAGAACTTTTATCATCCGATTCTACCGATGAAGAAGCCACTGTTGTGGCAGAAGTTTGA 1281 0.4426 MARLLRNANTFLFNRSLFNHGLPTRSCFKHGVVGTSQNLSFSTSKGKKRSKSDGSDSNDESMSKKDLALQQAMDQITSTFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIYGLPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSLDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFAGPTEVTCGGNALKFYASVRLNIKRVGFIKKGEETLGSQILVKVVKNKHAPPFKTAQFELEFGKGICKEAEVIELSIKHKLIKKSGSFYEYNGKNFHGKEALKNHLISSDGVQVLTTKLREKLLNADTEAVSDSELIVGDVPEELLSSDSTDEEATVVAEV 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02201 426 SUPERFAMILY RecA protein, C-terminal domain 333 374 IPR023400 -
Vivi4g02201 426 Gene3D - 95 393 IPR027417 -
Vivi4g02201 426 SMART AAA_5 118 292 IPR003593 GO:0016887
Vivi4g02201 426 MobiDBLite consensus disorder prediction 46 63 - -
Vivi4g02201 426 NCBIfam recombinase RecA 65 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi4g02201 426 PANTHER RECA 44 395 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi4g02201 426 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vivi4g02201 426 ProSiteProfiles RecA family profile 2. 263 336 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vivi4g02201 426 Pfam recA bacterial DNA recombination protein 68 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi4g02201 426 CDD RecA 96 333 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi4g02201 426 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vivi4g02201 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 331 IPR027417 -
Vivi4g02201 426 Hamap Protein RecA [recA]. 65 392 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi4g02201 426 MobiDBLite consensus disorder prediction 37 64 - -
Vivi4g02201 426 PRINTS RecA protein signature 307 336 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi4g02201 426 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi4g02201 426 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi4g02201 426 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi4g02201 426 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi4g02201 426 FunFam Recombinase RecA 94 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02201 Vivi-Chr4 108917236 108921283 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02201 K03553 - gmx:100798983 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02201 4 108917236 108921283 Vivi4g02201 4 108917236 108921283 ECH
Vivi4g02201 4 108917236 108921283 Vivi4g02201 4 108917236 108921283 PCT