Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01755 ATGAGTGCTTCTGGCTTTTCTTTATCTTCAACTGCAGAAGAGGTTACTCATGGGATCGATGGAACGGGACTTACTGCGATTATCACAGGAACAACCAATGGCATTGGCACTGAGACTGCACGAGTTCTTGCCTTGCGTGGTGTTCATGTGATTATGGGAGTAAGAAACCTTATTGCTGGAAAAAATATCAAAGAAGAAATACTCAAGGAGATTCCAACAGCAAAAGTTAATGTTATGGAGTTAGATCTCAGCTCAATGGCATCTGTTAGAAAATTTGCATCAGATTTCAGTTCATCTGATCTTCCATTGAACATTCTCATAAACAATGCAGGAATTTGTGCACCTGTTTTCACATTGTCAAAAGATGATATTGAACTACAGTTTGCTACAAATCATATAGGTCATTTTCTTTTGACAAATCTTTTGTTAGACACTATGAAGAAAACATCATACGAAAGTAATAAAGAAGGAAGAATTGTTAATGTGTCATCTGATGGTCACAATTATACATATCCTGAAGGAATTCTTTTTGATAATATTAATGATGAATCAAGTTATGAAAGATGGAAAGCATATGGCCAATCTAAGCTTGCTAACATTTTGCATGCAAATGAACTTGCAAGACATCTCAATGAAGATGGGGCTAATATTACTGCAAATTCTCTTCATCCAGGGGCTATCTTCACCAACATTGTAAGTCCTGAGGTTGGTCAAACAATCCCAAAAGGTTTACTAAATGTGCTTGGGGAATTTGTAATTAAAAGTGTTCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGAACCCAAAAGTGAAAGGAATTAGTGGAAAATATTTTTCGGATAATAATGTAGTTGAACCAAGCTCTCAGGGAAAAGACATTGATTTAGCAAAGAAACTATGGAATTTCAGCATGAAGTTAATTGAATAG 933 0.3601 MSASGFSLSSTAEEVTHGIDGTGLTAIITGTTNGIGTETARVLALRGVHVIMGVRNLIAGKNIKEEILKEIPTAKVNVMELDLSSMASVRKFASDFSSSDLPLNILINNAGICAPVFTLSKDDIELQFATNHIGHFLLTNLLLDTMKKTSYESNKEGRIVNVSSDGHNYTYPEGILFDNINDESSYERWKAYGQSKLANILHANELARHLNEDGANITANSLHPGAIFTNIVSPEVGQTIPKGLLNVLGEFVIKSVQQGAATTCYVALNPKVKGISGKYFSDNNVVEPSSQGKDIDLAKKLWNFSMKLIE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01755 310 Pfam short chain dehydrogenase 25 173 IPR002347 -
Vivi4g01755 310 Gene3D - 18 310 - -
Vivi4g01755 310 PANTHER RETINOL DEHYDROGENASE 4 309 - -
Vivi4g01755 310 CDD retinol-DH_like_SDR_c_like 23 302 - -
Vivi4g01755 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 101 112 IPR002347 -
Vivi4g01755 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Vivi4g01755 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 211 IPR002347 -
Vivi4g01755 310 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 286 IPR036291 -
Vivi4g01755 310 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
Vivi4g01755 310 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Vivi4g01755 310 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Vivi4g01755 310 PRINTS Glucose/ribitol dehydrogenase family signature 192 211 IPR002347 -
Vivi4g01755 310 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01755 Vivi-Chr4 79134703 79144324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01755 23 164 Lipid Metabolism Gene Families AT1G24470 27.815 9.59e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01755 - - mtr:25496527 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01755 4 79134703 79144324 Vivi4g01755 4 79134703 79144324 ECH