Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01584 ATGGTGAAGCTTCTACAATTTTCAAAATTCTTGTCCTTAATTTCTTTTCATAAAATCCGAAGCATCACCACCAGCATGTCCATAAACCTTAACTCCCACGCCTTCGCCGGAAACCCACTGAGATCCAAAACACCCAATAAAAACGACCTGTTTTCACCCACAATCGCACTCCAAACCCTCAAATCCCGAATCATCGATAACACCCATCACCAATCACCTAATTTCAAGGTACTTCCCTTCAGAAACGGAAAGCCCCTCGCAACTTCCAGTCATGGTGACTCATGGAGACTCGGTTGGATCGCTCTCACAGAGCTCACTGGATTATTGGCTCCTGAACTCAGCGCCGACTCCTTTGTGTATCTGGGTTCGGATGCTGAACAAGATGCGGTTTACTGGACGATTGACTTGTCTGGTGAGAGTGGGTTTGTGCCTGAATTTGATGGCCTACGGTTCAGCTATGTGGAGCTCAGAACGCTTATGGTTGCTACTGATTGGCTTGATTCCATAGCCATGGGAAACTTGTCTATTGCTGGTCATGCCAGAGCACTGTTAGAATGGCATAATATATCACGTTTTTGTGGACATTGTGGAGACAAAACAGTCCCAATGGAAGCTGGGAGGCGGAAGCAGTGTTCAAATGAATCATGCAAAAAGAGGATATATCCACGAGTTGACCCGGTGGTTATTATGCTGGTAATTGATCGAGAGAATAATCGTGCTCTTTTGAGCAAACAATCCAGATTTGTGCCTAGAATGTGGAGCTGCTTAGCAGGTTTTATAGAGCCCGGAGAAAGCTTGGAGGAGGCTGTAAGAAGAGAAACATGGGAGGAGACTGGTATTGAAGTGGGAGAAGTTGTATATCACAGTTCTCAGCCATGGCCTGTTGGACCAAACAGCATGCCATGCCAGCTGATGGTTGGATTCTTTGCATATGCTAAATCTCTTGAAATTAATGTGGACAAGGAGGAGTTGGAAGATGCTCAGTGGCACAGTAGAGAAGATGTAAGAAAAGCTCTGACATTTGCAGAGTACAAGAAAGCCCAAACAACTGCTGCAGCAAAGGTGGAACAAATGTGTAAAGGAGTAGAAAAAACTCACAGCTTGTCTACAGATTTTAATGTGGAAAGTGGCGAACTTACACCAATGTTTGTTCCTGGACCATTTGCAATAGCCCATCACCTTATTTCCTCTTGGGCATTCTCAGATCAAACTTGCCATTCAAAACCACTGAGTAGTTCTGTTTCAAATTTGTAG 1254 0.445 MVKLLQFSKFLSLISFHKIRSITTSMSINLNSHAFAGNPLRSKTPNKNDLFSPTIALQTLKSRIIDNTHHQSPNFKVLPFRNGKPLATSSHGDSWRLGWIALTELTGLLAPELSADSFVYLGSDAEQDAVYWTIDLSGESGFVPEFDGLRFSYVELRTLMVATDWLDSIAMGNLSIAGHARALLEWHNISRFCGHCGDKTVPMEAGRRKQCSNESCKKRIYPRVDPVVIMLVIDRENNRALLSKQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVGPNSMPCQLMVGFFAYAKSLEINVDKEELEDAQWHSREDVRKALTFAEYKKAQTTAAAKVEQMCKGVEKTHSLSTDFNVESGELTPMFVPGPFAIAHHLISSWAFSDQTCHSKPLSSSVSNL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01584 417 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 77 186 IPR015375 GO:0016787
Vivi4g01584 417 FunFam Nudix hydrolase 19, chloroplastic 223 402 - -
Vivi4g01584 417 SUPERFAMILY Nudix 174 352 IPR015797 -
Vivi4g01584 417 CDD NADH_pyrophosphatase 226 399 - -
Vivi4g01584 417 Gene3D - 58 222 - -
Vivi4g01584 417 PRINTS NUDIX hydrolase family signature 267 282 IPR020476 -
Vivi4g01584 417 PRINTS NUDIX hydrolase family signature 253 267 IPR020476 -
Vivi4g01584 417 ProSiteProfiles Nudix hydrolase domain profile. 222 352 IPR000086 -
Vivi4g01584 417 Pfam NUDIX domain 227 341 IPR000086 -
Vivi4g01584 417 ProSitePatterns Nudix box signature. 258 279 IPR020084 GO:0016787
Vivi4g01584 417 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 48 406 - -
Vivi4g01584 417 FunFam Nudix hydrolase 19, chloroplastic 88 222 - -
Vivi4g01584 417 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 223 399 - -
Vivi4g01584 417 Pfam NADH pyrophosphatase zinc ribbon domain 190 221 IPR015376 GO:0016787|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01584 Vivi-Chr4 63283305 63286368 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01584 K03426 - gmx:100780473 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01584 4 63283305 63286368 Vivi4g01584 4 63283305 63286368 ECH