Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01547 ATGGGTTGGGTTTCAGACACAGTTCACTCGGTCAAGTCCATTAAATTTAGAGAAGCTTTGACCCAAGTCATTACTCTCGGGTTGGTTGTAACATCCGCCCTAGTTATATGGAAAGGGTTAATGTGTATCACTGGAACTGAATCCCCCGTTGTGGTTGTTCTTTCCGGAAGCATGGAACCTGGTTTTCAAAGAGGTGACATTCTCTTCTTGCACATGAATAATGATCCTATTCGTGCAGGAGACATTGTGGTTTTCAATATAGATGGACGTGATATTCCAATTGTTCACCGTGTAATTAAGGTCCATCAGCGTCAAGATACACAAGATACTTATTACCTTACTAAAGGAGACAATAATGACATGGATGATAGGGTTTTGTACAATCATGGCCAGAATTGGTTGGAGAAAAAACATATTATGGGAAAAGCTGCCGGGTTTTTACCTTATGCTGGTTGGGCTACAATAATTATGTCCGAAAAACCCATTGTCAAGTATATACTCGTGGGGGCATTAGGACTACTGGTTTTGACATCGAAGGAATAG 543 0.4088 MGWVSDTVHSVKSIKFREALTQVITLGLVVTSALVIWKGLMCITGTESPVVVVLSGSMEPGFQRGDILFLHMNNDPIRAGDIVVFNIDGRDIPIVHRVIKVHQRQDTQDTYYLTKGDNNDMDDRVLYNHGQNWLEKKHIMGKAAGFLPYAGWATIIMSEKPIVKYILVGALGLLVLTSKE 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01547 180 CDD S26_SPase_I 49 143 IPR019533 GO:0004252|GO:0006465
Vivi4g01547 180 SUPERFAMILY LexA/Signal peptidase 35 144 IPR036286 -
Vivi4g01547 180 PANTHER SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 16 180 IPR001733 GO:0006465|GO:0008233|GO:0016020
Vivi4g01547 180 Pfam Peptidase S24-like 37 142 IPR015927 -
Vivi4g01547 180 Gene3D Umud Fragment, subunit A 48 156 - -
Vivi4g01547 180 FunFam Signal peptidase complex catalytic subunit SEC11 49 153 - -
Vivi4g01547 180 PRINTS Eukaryotic signal peptidase (S26B) family signature 112 123 IPR001733 GO:0006465|GO:0008233|GO:0016020
Vivi4g01547 180 PRINTS Eukaryotic signal peptidase (S26B) family signature 53 68 IPR001733 GO:0006465|GO:0008233|GO:0016020
Vivi4g01547 180 NCBIfam signal peptidase I 23 176 IPR001733 GO:0006465|GO:0008233|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01547 Vivi-Chr4 60693006 60696547 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01547 K13280 - apan:127249349 294.278