Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01525 ATGGTAGTAACTGCTGCAACAGCCTCGTTTTTTCCTGTTACTTCATCCTCTGACATTTCTAGAAAACCCTCCAAACATGGAGCTACCTCTGTTAACTTTGGAGGATTCAAATCCAAACAAAGCTCTAATGGAATAAACCTTAAGGCAAATGCATCCTCTTCCAAAACCGTGTTTACTGCAACGCCCGTCAAGGTTGAAAATGATTCATCATCACAACAATATCACCAAAGGACGTTCATCAATCAGCTGCCTGATTGGAGCGTGCTCCTTGCTGCCGTTACAACAATATTCCTTGCTGCTGAAAAGCAGTGGACCACGCTTGATTGGAAGCCAAGGCGGCCCGATATGCTCGCTGACCCATTTGGCATAGGAAAAATTGTCAATGATGGTTTTGTGTTTCGACAAAGTTTTCCAATTAGATCCTATGAAATAGGTGCCGATAAAACCGCGTCTATAGAAACATTAATGAATCATTTGCAGGAAACTGCACTTAATCATGTTAAGACTATTGGGCTTCTTGGGGATGGCTTTGGTTCTACACCGGAAATGTGCAAAAAGAACCTAATATGGGTTGTAACTCGAATGCAAATTGTGGTTGATCGTTACCCGGTGTGGGGTGATGTTGTTCAAGTAGACACTTGGGTTTCTGCATCTGGAAAGAATGGTATGCGTCGTGATTGGCTTGTGCGTGATACCAAAACAGGTGAAGTCATGACAAGGGCATCCAGTGTTTGGGTAATGATGAATAAGCTGACAAGGAAACTCTCTAAAATTCCAGAAGAAGCCAAAGAAGAAATAGAGCCTTATTTTGTTAATTCTAATTCAGTTCTGAATGAGGATAATAAAAAGCTAACTAAACTTGATGATACGGCTGAATATATTCGAACTGGTCTAAGTCCCAGATGGAATGATCTAGATGTTAATCAGCATGTTAATAATGTGAAGTACATTGGATGGATTCTGGAGAGTGCTCCGCAGCAAATTTTGGAGAGTCATGAGCTGCATTCAGTGAGTTTGGAGTACAGGAAGGAATGTGGGAGGAACAGTGTACTTGAGTCCTTGACTGATGTAACTGATGCTGACATTGGATTTGTTGAATGCAAACACTTGCTTCGACTGGAAGACGGTGCGGAGATTGTGAGGGGTCGGACTGAGTGGAGACCAAAAGCTGTCAACAATTTTGATGTTTTGAATCAGGTTCCATCACAGAGCATCTAA 1218 0.4195 MVVTAATASFFPVTSSSDISRKPSKHGATSVNFGGFKSKQSSNGINLKANASSSKTVFTATPVKVENDSSSQQYHQRTFINQLPDWSVLLAAVTTIFLAAEKQWTTLDWKPRRPDMLADPFGIGKIVNDGFVFRQSFPIRSYEIGADKTASIETLMNHLQETALNHVKTIGLLGDGFGSTPEMCKKNLIWVVTRMQIVVDRYPVWGDVVQVDTWVSASGKNGMRRDWLVRDTKTGEVMTRASSVWVMMNKLTRKLSKIPEEAKEEIEPYFVNSNSVLNEDNKKLTKLDDTAEYIRTGLSPRWNDLDVNQHVNNVKYIGWILESAPQQILESHELHSVSLEYRKECGRNSVLESLTDVTDADIGFVECKHLLRLEDGAEIVRGRTEWRPKAVNNFDVLNQVPSQSI 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01525 405 FunFam Acyl-[acyl-carrier-protein] hydrolase 124 392 - -
Vivi4g01525 405 Pfam Acyl-ATP thioesterase 1 119 IPR021113 GO:0016790
Vivi4g01525 405 Pfam Acyl-ACP thioesterase 131 387 IPR002864 GO:0006633|GO:0016790
Vivi4g01525 405 Gene3D Hotdog Thioesterase 123 393 - -
Vivi4g01525 405 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 291 387 IPR029069 -
Vivi4g01525 405 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 39 391 IPR045023 GO:0006633|GO:0016297
Vivi4g01525 405 CDD 4HBT 133 249 - -
Vivi4g01525 405 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 128 275 IPR029069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01525 Vivi-Chr4 58994498 58997656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01525 1 389 Acyl Lipid Metabolism Gene Families AT1G08510 69.554 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01525 K10781 - gmx:100170693 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01525 4 58994498 58997656 Vivi4g01525 4 58994498 58997656 ECH