Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01395 ATGGCCTCCTCCTTAACCCAACCACCACCACCTCTTCCCTCTCTCCACCACCCAATTCCCAAATCCAACCTCACCCGCCGCTCCCTCCTCCTCACCTCCACTGCCACTCTCTCCTTCCCCTCCCTCTCCTCTTCCGCCTTACCCACACAACCACCAAACCCCACCATCACCGACCGCGTCTTCATGGAATTCAGCCTCTGCCCCAACTACTACCTCCCGAATCGCACCCTAGGAGATACCATTTCCACTCTATGCTCAGATTCCACCTCACTCGGCCGCGTCATCATTGGCCTCTACGGTAACCTCGTTCCCCGCACTGTCTCCAATTTCAAATCCCTCTGCATTTCCGCTTCCAGTTCTAACCCTAATTCCTCTTCCTACAAAGACACTATCATCCATAAGGTTTTTCCAGGTCAGTACTTTCTTGGCGGACATCAGGGTCGTCCTGAAAGAGGCGACGTCCAACCTCCTAGCTATCTCCCCCGCAACACTGAAACAATTGACCCCAAGGCATTTACGCTAACACATTCTCGGGCCGGCGTTGTTTCGCTGCCACTCTCCGAGAATGATGATGATGATGAGATTAAGCTTGACCCTGAATACAGGAACGTTGAATTCTTAATCACTACTGGACCTGGACCTTGTCCTCAGCTTGATAACAAGAATGTTGTCTTTGGAACGGTGCTTGAAGGGTTGGATGTCATCACAGCCATAGCTTCCACTCCCACTTACCAACCAGGTGAACGAATTCGCCAATTTAATGACTTGGCAGAATTTTTCGGAGACGAAAGGGCACAGAATGCACGTGCTATATGGAACAGGCCTCTTACCACCATCTATATTAGTGACTGTGGAGCACTAGAGGTTGCAAAGCCTTCTCTCACACCTTCTCTCCCATAA 900 0.5089 MASSLTQPPPPLPSLHHPIPKSNLTRRSLLLTSTATLSFPSLSSSALPTQPPNPTITDRVFMEFSLCPNYYLPNRTLGDTISTLCSDSTSLGRVIIGLYGNLVPRTVSNFKSLCISASSSNPNSSSYKDTIIHKVFPGQYFLGGHQGRPERGDVQPPSYLPRNTETIDPKAFTLTHSRAGVVSLPLSENDDDDEIKLDPEYRNVEFLITTGPGPCPQLDNKNVVFGTVLEGLDVITAIASTPTYQPGERIRQFNDLAEFFGDERAQNARAIWNRPLTTIYISDCGALEVAKPSLTPSLP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01395 299 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP28, CHLOROPLASTIC 16 299 IPR044178 -
Vivi4g01395 299 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g01395 299 MobiDBLite consensus disorder prediction 1 17 - -
Vivi4g01395 299 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 89 245 IPR002130 GO:0000413|GO:0003755
Vivi4g01395 299 SUPERFAMILY Cyclophilin-like 80 287 IPR029000 -
Vivi4g01395 299 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 220 235 IPR002130 GO:0000413|GO:0003755
Vivi4g01395 299 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Vivi4g01395 299 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 144 IPR002130 GO:0000413|GO:0003755
Vivi4g01395 299 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 81 286 IPR002130 GO:0000413|GO:0003755
Vivi4g01395 299 Gene3D - 55 259 IPR029000 -
Vivi4g01395 299 FunFam Peptidyl-prolyl cis-trans isomerase 51 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01395 Vivi-Chr4 50790121 50797516 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01395 K03768 - gmx:100816868 399.823