Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01215 ATGGGTTCTTTGTTTCAGATTCTGGGTCTGGTGTATTTGGCATGTTTTGGTTTTTTTGCTGTGGGCACAGTGAGTGAAAGTGTGAAGAAAGGGAGTGTTGTTATTGATGGGAGTTCTGTGATTGGGAACATTGATGATGATTTTGTTTGTGCTACTTTGGATTGGTGGCCTCCTCAGAAATGTGATTATGGGACCTGTAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGATCTCAACAACAAGCTTTTTTTAAATGCTGTGAAAGCCTTTACGCCGTTGAAACTGAGATTAGGCGGAAGTTTGCAAGATAAGGTGATATATGGGACTGATGATTACATACAATCATGCACTCCTTTTGTTCGAAACGAATCGGAAATGTTTGGATTCACACAAGGGTGCCTCCCAATGCCGAGATGGGATGAACTTAATGATTTCTTCCAGAAAGCAGGGGCTAAGATTGTGTTTGGATTGAGTGCTCTTAATGGAAAGTCAATCCATTCTGGTTCTGCAGTAGGTCCTTGGAACTACTCCAACGCCGAATCGTTTATTAAATACACTGTTGGGAAGAACTATGACATTCATGGATGGGAACTTGGCAATGAATTGAGCGGAAGTGGTGTTGGAACACGTATTTCAGCAGACCAATATGCTTCTGATTTTGCTTCTTTAAGCAACATTGTTCAGAATGCGTATAAAGACATTGAGCCTAAGCCATTAGTCATTGCTCCCGGAGGTTTCTTTGATGCAACATGGTTCAAGGAGTTTATAACCAAATCTGGCAACTCTTTGGATGTCGTCACGCACCACATTTATAACCTTGGACCAGGAGTTGATACGCACCTTGTGGAAAGAATTCTGAATCCTTCATATCTTGACGGAGAGAAAAGTACATTCAAAGCCCTGAAAGATGTACTTGGAAGTACAGGAACTTCAGCAACATCGTGGGTTGGTGAGTCCGGCGGGGCTTATAACAGTGGCCATCATCTTGTATCCGACGCATTTGTGTATAGTTTTTGGTATTTGGATCAACTCGGCATGTCTGCGTCATACGATACTAAAACATATTGCAGACAAAGTTTGATAGGAGGAAACTATGGTTTACTCAATACTACCAATTTCCATCCAAATCCAGATTATTATAGTGCTCTTCTTTGGCACCGACTCATGGGAAGACGCGTACTATCAACTACCTTCTCAGGGACAAACAAGATACGAGCTTATGCACACTGCGCAAAACAATCCAAAGGAATCACCATACTATTGATCAACCTCGACAACAGCACAACCATTGAAGCAACATTTGGCAGCACTAACAGTTTGTCGTACCGAAAGATGTCTTATAGTTCAAAAATAATGAAACTACCTCTTCGCAGTACAAGTGAAACAGCAAGAGAAGAGTATCATCTAACTTCACCAAATGGAAACTTACATAGCCAAACCATGTTACTGAATGGAAATGTTTTAACTGTAAATTCAGATGGTGATATCCCTCCTTTGGAGCCGATATTTGTAAACTCGTCAAAGCCGATTAGGGTTGCTCCTTTCTCGATTGTATTTTCTCATATACCTGATGCTGTTCTTTCGGCTTGCAGCTAG 1596 0.4142 MGSLFQILGLVYLACFGFFAVGTVSESVKKGSVVIDGSSVIGNIDDDFVCATLDWWPPQKCDYGTCSWGLASLLNLDLNNKLFLNAVKAFTPLKLRLGGSLQDKVIYGTDDYIQSCTPFVRNESEMFGFTQGCLPMPRWDELNDFFQKAGAKIVFGLSALNGKSIHSGSAVGPWNYSNAESFIKYTVGKNYDIHGWELGNELSGSGVGTRISADQYASDFASLSNIVQNAYKDIEPKPLVIAPGGFFDATWFKEFITKSGNSLDVVTHHIYNLGPGVDTHLVERILNPSYLDGEKSTFKALKDVLGSTGTSATSWVGESGGAYNSGHHLVSDAFVYSFWYLDQLGMSASYDTKTYCRQSLIGGNYGLLNTTNFHPNPDYYSALLWHRLMGRRVLSTTFSGTNKIRAYAHCAKQSKGITILLINLDNSTTIEATFGSTNSLSYRKMSYSSKIMKLPLRSTSETAREEYHLTSPNGNLHSQTMLLNGNVLTVNSDGDIPPLEPIFVNSSKPIRVAPFSIVFSHIPDAVLSACS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01215 531 PANTHER HEPARANASE-RELATED 23 530 - -
Vivi4g01215 531 SUPERFAMILY (Trans)glycosidases 44 389 IPR017853 -
Vivi4g01215 531 Gene3D Glycosidases 64 387 - -
Vivi4g01215 531 FunFam heparanase-like protein 3 68 387 - -
Vivi4g01215 531 Pfam Glycosyl hydrolase family 79, N-terminal domain 31 345 IPR005199 GO:0016020|GO:0016798
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01215 Vivi-Chr4 38474219 38477816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01215 10 531 Glycoside Hydrolase AT5G07830 48.037 7.11e-179 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01215 K07964 - gmx:100802477 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01215 4 38474219 38477816 Vivi4g01215 4 38474219 38477816 ECH