Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01179 ATGGAAGGAGGTGTACCAGAAGCAGATATGTCTGCTTTCAGAGAATGTTTGTCTCTTTCATGGAAAAATCCTTATGTTCTTCGTCTTGCTTTCTCTGCTGGAATTGGTGGCCTTCTTTTTGGATATGACACTGGGGTTATATCTGGAGCTCTTTTGTATATTAGAGATGACTTTAAAGCAGTAGATAGAAAGACATGGCTTCAGGAAGCAATAGTGAGTACAGCAATAGCTGGAGCAATCATAGGAGCTTCAGTTGGTGGATGGATGAATGACAAACTTGGAAGGAAAATATCAATCCTTGTTGCAGATACCCTCTTTTTATTAGGGTCTCTTGTGATGGCTTTTGCTCCAAGTCCAGCTGTTCTCATTCTTGGTAGAGTCCTTGTTGGTATTGGTGTTGGAATGGCCTCCATGGCTTCTCCTTTGTACATCTCAGAAACTTCACCCACTAGAGTTAGAGGTGCTCTTGTTAGTCTCAACAGTTTTCTCATTACTGGTGGACAGTTCCTTTCCTATCTCATCAACTTGGCCTTTACTAAGGCGCCACACCCGTGGAGGTGGATGTTAGGAGTAGCGGCAGCACCTGCAGTCATACAGATTATATTCATGTTGACCCTCCCAGAATCGCCTCGTTGGTTGTACCGTCAGGGAAAAGAGGAAGAAGCAAAACAAATTCTGAGAAAGATATACGACAATGTTGAGGACTTCAACAACGAAATTCAAGCGTTAAAAGAATCGGTTGATGCGGAACTGAAGAACACAGAAAAAATAAGCATGATCCAGCTTCTAAAAACAACATCAGTAAGAAGAGGTTTATATGCTGGTGTAGGACTTGCATTCTTTCAACAATTTAGTGGTATCAACACAGTCATGTACTATAGTCCCTCAATTGTTCAATTGGCTGGTTTTGCATCCAACAAAACAGCACTTCTTCTGTCACTAATCACTTCCGGCCTCAACGCATTTGGTTCGATTCTGAGCATATATTTCATCGATAAGACCGGAAGGAAGAAACTCGCATTGATTAGTTTGATTGGTGTCGTGTGCACTTTGGTTCTTTTAACTGTTACTTTCCGTCAGGCTGAAATTCATTCACCTATGGTTAGTTTCGACGATAGCATGAGTTTTAGGAATAACACATGCCCCGATTTCAAAACAGCGGTGAATAATGATAAATGGGATTGTATGACATGCTTAAAGGCTTCTTCAACTTGTGGATTTTGTGCTGCTCCTAACAAGCTCCAACCGGGGGCGTGTGTAATCTCTAGCGGTTCTACGAACGACATGTGTGCGAAGGATCATAGAGCATGGTACACAAGAGGATGTCCAAGCAATTTTGGTTGGATTGCGCTAATAGGCCTTGCACTCTACATCATGTTCTTCTCACCAGGAATGGGGACAGTTCCATGGGTTGTTAACTCTGAAATCTATCCGTTAAGATACCGAGGCGTCTGCGGAGGAATAGCTTCTACAACAGTTTGGGTTTCCAACCTTATTGTTTCTCAATCCTTCTTAACTTTGACTGAGGCAATTGGACCAGCTTGGACTTTCTTGCTCTTTGGAATCATTGCATTTATAGGAGTTTTCTTTGTGATTGTATTTGTGCCAGAGACTAAGGGGGTTCCAATAGAAGAAGTGGAGAGCATGCTTGAGAAGAGATTTGTGCAAATTAAGTTTTGGCAGAAGAGAGAAAAGTAG 1698 0.4205 MEGGVPEADMSAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKAVDRKTWLQEAIVSTAIAGAIIGASVGGWMNDKLGRKISILVADTLFLLGSLVMAFAPSPAVLILGRVLVGIGVGMASMASPLYISETSPTRVRGALVSLNSFLITGGQFLSYLINLAFTKAPHPWRWMLGVAAAPAVIQIIFMLTLPESPRWLYRQGKEEEAKQILRKIYDNVEDFNNEIQALKESVDAELKNTEKISMIQLLKTTSVRRGLYAGVGLAFFQQFSGINTVMYYSPSIVQLAGFASNKTALLLSLITSGLNAFGSILSIYFIDKTGRKKLALISLIGVVCTLVLLTVTFRQAEIHSPMVSFDDSMSFRNNTCPDFKTAVNNDKWDCMTCLKASSTCGFCAAPNKLQPGACVISSGSTNDMCAKDHRAWYTRGCPSNFGWIALIGLALYIMFFSPGMGTVPWVVNSEIYPLRYRGVCGGIASTTVWVSNLIVSQSFLTLTEAIGPAWTFLLFGIIAFIGVFFVIVFVPETKGVPIEEVESMLEKRFVQIKFWQKREK 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01179 565 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 539 IPR020846 GO:0022857
Vivi4g01179 565 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 10 553 - -
Vivi4g01179 565 PRINTS Sugar transporter signature 474 486 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vivi4g01179 565 PRINTS Sugar transporter signature 37 47 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vivi4g01179 565 PRINTS Sugar transporter signature 282 292 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vivi4g01179 565 PRINTS Sugar transporter signature 123 142 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vivi4g01179 565 PRINTS Sugar transporter signature 451 472 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vivi4g01179 565 Gene3D MFS general substrate transporter like domains 418 557 IPR036259 -
Vivi4g01179 565 Gene3D MFS general substrate transporter like domains 20 371 IPR036259 -
Vivi4g01179 565 NCBIfam sugar porter family MFS transporter 20 360 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vivi4g01179 565 SUPERFAMILY MFS general substrate transporter 18 547 IPR036259 -
Vivi4g01179 565 ProSitePatterns Sugar transport proteins signature 2. 128 153 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vivi4g01179 565 Coils Coil 219 253 - -
Vivi4g01179 565 Pfam Sugar (and other) transporter 446 549 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vivi4g01179 565 Pfam Sugar (and other) transporter 30 360 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vivi4g01179 565 CDD MFS_HMIT_like 32 537 - -
Vivi4g01179 565 FunFam Probable inositol transporter 2 419 558 - -
Vivi4g01179 565 FunFam Probable inositol transporter 2 20 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01179 Vivi-Chr4 36880158 36885574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01179 1 565 Organic Solute Cotransporters AT1G30220 68.182 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01179 K08150 - gmx:100796800 871.307