Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01174 ATGGAGGTAGAAGAAATCGAGAAGAAAGCAGTGAGAATATTCGTCGGAGGATTGGGCGAAGCCGTAACCACCGACGACATTCGCCGCCTATTCGAATCATTAGGCACCGTTCAATCCCTCGAAACCATCCGAACCAAAGGCCGCAGCCTCGCTTACCTCGACTTCCTCTCCGATCCTAAATCCCTTTCTAAACTTTTCAGCAAGTATAATGGATGTGTGTGGAAAGGTGGGAAGCTGAGACTTGAAAAGGCGAAAGAGCACTACCTTGATCGGATGAAAAAAGAATGGGAAGAAGAGAAGATTCGTAGTATAGAAACACCGGCTAGTGAGATTTCTACTCAGAAGGAGGATTTGGTGAAGGAAAAGCCTATTTCAAGACGCATTTTGGATTCGACTGAAAAGCCTCTTAATATTTACTTTCCGAGATTAAGAACGGTGAAATCCATACCATTCAGTGGAACTGGCAAGCACAAATATAGTTTCCAGAATATTAAAGTTCCTCCTCTCCCTGTGCATTTTTGTGATTGTGAGGAACATTGTAGTCCTTTTATCCCTAAAAAGGAAAAGTTATCTATGAATGCGGCAGCTGAAACTGGTGGAATAAATGATGAAGAAATTAGCATCATGAATGCTGTGATGAACAAGCTGTTTGAAAAAGAAAAGGTTTCTAACCCTAAGCAACTTGCAAAGAAGCATGATTCATTTGAATCTCCACAATCTAATAAAGTTGAAGTAGAGAATGCAAAAGATGTTGTTGTTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATAATGATGATAATGATGATGATGATGATGATGATGATGATGATGGTCTCATAATCAACATTGCAACGAAGAAAAAGAAAACGTCCTTAACAGGGACCCAAGAACTTGAAAAGATCTTGGAAAATCAGGAATGGTCCAATAAAACAAATTTGGCAGAGGAAGAACCCATTGAAGTGCAGAAAAGGAGCAACAACAATCCTAACAAGGTAAAGAAGAGAAAACTACTTCCCAAATCAGAAAGCGACAGCAATGAAGGTGTGTCTAGTGTCCCTGCTGGCAAGAGTAAAATGCAGACCCTTCTTGATGAGCTTGGATCTGGTGCACAGCCTACTGAACCAGGATATGATCTCGGGGAATCGGGCAAAGTTTCATGGTCACAGAAGTCTTCATGGCGAGAACTTGTTGGTAAAGGAGGCAATGTTTCCTTCAGCGCCTCTCTCATATTACCGAAGTTTGATTCTGGTAAAGATCAACAAAATTCTGATGGTTCCTGCACTTCTTCATCTACAAATGATGAAACTGAAGACATGGAAAGCGATGAATCTCAACCTGAAGACGTGGAAAGCGATGAATCTCAACCTGAAGACGTGGAAAGCGATGAATCTCAACCCGAAGACGTGGAAAGCGATGAATCTCTACCTGAAGACATGGAAAACGATGAATCTCTATCTGAAGACATGGAAAGTGATGAATCTCAACCTGAAGACGTGGAAAGTGATGAATCTCAACCTGAAGACTTGGAAAGTGATGAATCTCAACCTGAAGACTTGGAAAGTCATGAATCTCAACCTGAAGACTTGGAAAGTGATGAATCTCAACCTGAAGACTTGGAAAGTGATGAATCTCAACCTAAAGACATGGAAAGTGATGAATCTCTCCCTTCCCACGCACAAGTGACAGAAGAGCCTGCTGAAGCTCAACCTACCAATGCACATGTGATTGAAGAGCCGGCTGAATCTCAACCTACCAATTCACAAGTGATAGAAGAACCTGCGGAAACTCAGCATAAAACGGCACCAAAAATAACCGGCAGAGGTTCTTCATGGCTGCAAAAGGAATCCTGGACCCAACTGGTCAATAAGGATAACAATTCATTTAGCATTTCACAAATTTTGCCTGACATCACTTTCCCGGAACAAACAGCCAAGGAACCCATTTTGTACCCTACTACCAATACCAATGATCGCAAGCATAACGGTGCTGGTAAGAATACTATTAATGAAACTGTCATTGATAGCTTCAACTTAGGGGAGAGTGCACCGGAGAAGAATGAGCATGCTGGTGCTGACAATATAGTTTCTGCTCCAGTAGCTGAGACAACAGTTGAAACAAATTCAAGGGAAGGATCCAGTGCAAATGATGAAATAGGAGAAACTTGCTCATTTATGAGAAGTGCTGCTTCTTTGAAAGAGTGGGCAAAAGCTAAAGCTGCTCTTAGTGGATCACTCAAAAGAAAACATAGTGAGAAATAA 2289 0.4142 MEVEEIEKKAVRIFVGGLGEAVTTDDIRRLFESLGTVQSLETIRTKGRSLAYLDFLSDPKSLSKLFSKYNGCVWKGGKLRLEKAKEHYLDRMKKEWEEEKIRSIETPASEISTQKEDLVKEKPISRRILDSTEKPLNIYFPRLRTVKSIPFSGTGKHKYSFQNIKVPPLPVHFCDCEEHCSPFIPKKEKLSMNAAAETGGINDEEISIMNAVMNKLFEKEKVSNPKQLAKKHDSFESPQSNKVEVENAKDVVVDDDDDDDDDDDDDDDDDDDDNDDNDDDDDDDDDDGLIINIATKKKKTSLTGTQELEKILENQEWSNKTNLAEEEPIEVQKRSNNNPNKVKKRKLLPKSESDSNEGVSSVPAGKSKMQTLLDELGSGAQPTEPGYDLGESGKVSWSQKSSWRELVGKGGNVSFSASLILPKFDSGKDQQNSDGSCTSSSTNDETEDMESDESQPEDVESDESQPEDVESDESQPEDVESDESLPEDMENDESLSEDMESDESQPEDVESDESQPEDLESDESQPEDLESHESQPEDLESDESQPEDLESDESQPKDMESDESLPSHAQVTEEPAEAQPTNAHVIEEPAESQPTNSQVIEEPAETQHKTAPKITGRGSSWLQKESWTQLVNKDNNSFSISQILPDITFPEQTAKEPILYPTTNTNDRKHNGAGKNTINETVIDSFNLGESAPEKNEHAGADNIVSAPVAETTVETNSREGSSANDEIGETCSFMRSAASLKEWAKAKAALSGSLKRKHSEK 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01174 762 PANTHER TRANSCRIPTIONAL REGULATOR 614 761 - -
Vivi4g01174 762 MobiDBLite consensus disorder prediction 690 729 - -
Vivi4g01174 762 CDD RRM_NOL8 12 85 IPR034138 -
Vivi4g01174 762 MobiDBLite consensus disorder prediction 586 604 - -
Vivi4g01174 762 Gene3D - 3 109 IPR012677 -
Vivi4g01174 762 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 56 IPR000504 GO:0003723
Vivi4g01174 762 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Vivi4g01174 762 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 86 IPR000504 GO:0003723
Vivi4g01174 762 MobiDBLite consensus disorder prediction 445 557 - -
Vivi4g01174 762 MobiDBLite consensus disorder prediction 709 729 - -
Vivi4g01174 762 MobiDBLite consensus disorder prediction 353 367 - -
Vivi4g01174 762 MobiDBLite consensus disorder prediction 425 444 - -
Vivi4g01174 762 MobiDBLite consensus disorder prediction 223 288 - -
Vivi4g01174 762 MobiDBLite consensus disorder prediction 312 401 - -
Vivi4g01174 762 MobiDBLite consensus disorder prediction 424 621 - -
Vivi4g01174 762 MobiDBLite consensus disorder prediction 223 239 - -
Vivi4g01174 762 MobiDBLite consensus disorder prediction 250 288 - -
Vivi4g01174 762 SMART rrm1_1 12 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01174 Vivi-Chr4 36507679 36513111 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01174 - - vvo:131594711 1411.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01174 4 36507679 36513111 Vivi4g01174 4 36507679 36513111 ECH