Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01067 ATGAATATCAAGTATCTGCTGGTTGTTATATGTCTCTGGCTTTGTTCCATATCTTTGTCTCTTACAATTTCTGATGATGGGTTGATGAGAGTTTCTCTAAAAAGGAGAAATTTGGATTTTGACACTCTTAATTCTGCCATAGTTTTAAAGAGTGTTGATAAAAACTGTTCCCAAAAAGATGTTGTTGTGTATCTTAAGAATTACTTTGATGTACAATATTTTGGGGAAATTGGTATTGGTTCACCTCCACAGTACTTCAATGTTGTTTTTGACACTGGTAGCTCCAATCTTTGGGTTCCATCTTCCAAATGCATATTCTCAATTGCTTGCTATTTTCATTCCAAATATAGTTCAAAGATATCTACCACTTATAAGGAAATTGGAATACGTTGTAAAATTCCTTATGATCAAGGATACATTTATGGATTCTTCAGCCAAGACAATGTAAAAGTTGGGGATATTATTATCAAAGATCAAGGATTTTCTGAGATTACACGGGAAGGAAATTTCGCACTTTTAGCTCTTCCGTTTGATGGTATACTTGGACTTGGATTCCAGGATATTTCAGTTGGAGGAGTCACACCAGTGTGGTATAATATGATAGAACAAGGACAAGTACTGGAAAAAGTTTTCTCTTTTTGGCTAAATAAAGATCCATTGGGAGAAATTGGGGGTGAGATTGTGTTTGGAGGTATGGACAAGAGGCATTTTAAAGGTGAACACACTTACTTTCCAATTTCTCAAAAGGGTTATTGGCAGATTGAAGTGGGAGATATTCTACTTGCAAATGATACAACAGGTTTTTGTGATGGTGGATGTGCTGCAATAGTGGACTCAGGAACATCTTTAATTGCTGGTCCAACTGGTGTTGTGACTCAAATCAACCATGCCATTGGAACAGAAGGATATGTTAGTTTTGAGTGTAAAAGCATTGTCCATAACTACGGAGATTTGATATGGGAATCCTTGATTTCAGGAGTTTGTTCTCTTTCTCTCTATGTACTTATATTCTCAACACTAACCTTTTACTTATCTCGGTATGTCACATGTCTGCAGTTAAATCCTGAAATCTTATGCGCGAACATTGGACTTTGTTCATATAACGGATTTCAAAGATCGAACGATGTTATTGAAACAGTGGTGCACAATGAAACTCGGGATGGATCGCAAACAACGAAGAGCCCCTTTTGTAGTTTTTGCAATATGATTGTCCTTTGGATTCAAGTTCAGATTCAGCAAAGCGACGCAAAGGAAAAAGTATTAAAGCACGTGGACGAGCTATGCGAGAGGCTCCCGAATCCGGTCGGACAATCATTTATAAACTGCAGTAGTGTCTCAGATATGCCAAACATTACATTCTCAATTGGAAGCAAATTGTTTCATCTGTCTCCACAACAGTATATTCTTAAAGTTGATGATGATAAAGATAGTTCTCCTGTGTGCTATAGTGGATTTGTTGCTCTAGATGTGCTTTCTCCACAGGGTCCCCTCTGGGTTCTTGGAGACATTTTCTTAAAGGCATATCACACAGTGTTTGATTATGGTTTCGGAAAATGTATAAGAAATATGATGAGAGCTTATTCATAA 1587 0.3705 MNIKYLLVVICLWLCSISLSLTISDDGLMRVSLKRRNLDFDTLNSAIVLKSVDKNCSQKDVVVYLKNYFDVQYFGEIGIGSPPQYFNVVFDTGSSNLWVPSSKCIFSIACYFHSKYSSKISTTYKEIGIRCKIPYDQGYIYGFFSQDNVKVGDIIIKDQGFSEITREGNFALLALPFDGILGLGFQDISVGGVTPVWYNMIEQGQVLEKVFSFWLNKDPLGEIGGEIVFGGMDKRHFKGEHTYFPISQKGYWQIEVGDILLANDTTGFCDGGCAAIVDSGTSLIAGPTGVVTQINHAIGTEGYVSFECKSIVHNYGDLIWESLISGVCSLSLYVLIFSTLTFYLSRYVTCLQLNPEILCANIGLCSYNGFQRSNDVIETVVHNETRDGSQTTKSPFCSFCNMIVLWIQVQIQQSDAKEKVLKHVDELCERLPNPVGQSFINCSSVSDMPNITFSIGSKLFHLSPQQYILKVDDDKDSSPVCYSGFVALDVLSPQGPLWVLGDIFLKAYHTVFDYGFGKCIRNMMRAYS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01067 528 Gene3D Acid Proteases 232 515 IPR021109 -
Vivi4g01067 528 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 88 99 IPR001969 GO:0004190|GO:0006508
Vivi4g01067 528 PRINTS Pepsin (A1) aspartic protease family signature 225 238 IPR001461 GO:0004190|GO:0006508
Vivi4g01067 528 PRINTS Pepsin (A1) aspartic protease family signature 79 99 IPR001461 GO:0004190|GO:0006508
Vivi4g01067 528 PRINTS Pepsin (A1) aspartic protease family signature 498 513 IPR001461 GO:0004190|GO:0006508
Vivi4g01067 528 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 275 286 IPR001969 GO:0004190|GO:0006508
Vivi4g01067 528 FunFam Lysosomal aspartic protease 59 301 - -
Vivi4g01067 528 Pfam Saposin-like type B, region 1 395 432 IPR007856 GO:0006629
Vivi4g01067 528 ProSiteProfiles Saposin B type domain profile. 393 434 IPR008139 -
Vivi4g01067 528 Gene3D - 303 432 - -
Vivi4g01067 528 SUPERFAMILY Acid proteases 9 515 IPR021109 -
Vivi4g01067 528 SUPERFAMILY Saposin 352 432 IPR011001 -
Vivi4g01067 528 Pfam Eukaryotic aspartyl protease 72 515 IPR033121 -
Vivi4g01067 528 ProSiteProfiles Peptidase family A1 domain profile. 73 528 IPR033121 -
Vivi4g01067 528 Gene3D Acid Proteases 29 231 IPR021109 -
Vivi4g01067 528 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 52 515 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01067 Vivi-Chr4 32091557 32095437 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01067 K08245 - gmx:100500551 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01067 4 32091557 32095437 Vivi4g01067 4 32091557 32095437 ECH