Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00623 ATGATTTGTAGAAGGGTTTTTGTGATTATGATGATGAGTCAAATATTATTATTATGGTGTTGTTATGTGGAAGGGCTTGGAGTGAATTGGGGAACACAAGCAACTCATCCATTGAAACCAGACACAATAGTTGAGATGTTGAAAGATAATGGAATTGAGAAAGTGAAATTGTTTGATGCTGATGATGAAACTATGAGTGCACTTGGTGGATCAGGAATTGAAGTCATGGTTGGTATACCAAATAATCAATTGCTTGATATGAGTAATTATGATCGTGCTTTGCAATGGGTTAGGAAAAATATTACTCGGTATAACTTCAAATCTGGAGGTGTTAATATCAAGTATGTAGCAGTTGGAAATGAGCCATTTTTGAAATCCTACAACAATTCATTTTTGAATGTAACCTTCCCTGCCCTACAAAACATTCAAAATGCCCTAAATGAACTTGGTTTAGGTGACTCCATAAAAGCCACAGTCCCTTCCAATGCAGATATTTATGGATATCCAGATCCAAACAACGCGGTTCCCTCGTCCGGAATATTCCGACCCGATTTATCCAACCTCATGACCCAAATAGTCCAATTCCTAAACAAAAACAATGCACCATTCACAGTCAACATTTACCCTTTTTTAAGTCTCTATGAAAATGACAATTTTCCATTTGATTTTGCATTTTTTGATGGAGTCACAAATCCATTGAATGATAATGGAATTTCCTACACAAATGTTTTTGATGCAAATTTTGATACTTTAGTCTCAGCATTAAAATCAATAGGGTTTGGTAATATGGAAATTCTTGTTGGTGAAGTTGGATGGCCCACAGATGGTAACAAAAATGCAAATATTCAAAATGCATTAAGGTTTTATAATGGACTTTTACCTAGGCTTGCATCAAATAGAGGAACACCAAAAAGAAATGGTTACATTGAAGTTTATTTATTTGGATTAATTGATGAAGATGCAAAAGCTATAGCTCCTGGAAATTTTGAAAGACATTGGGGAATTTTTAGTTTTGATGGAAAACCTAAATTTCCAATGCATATTTCAACTAAACATGGTGAGAATAGGTTATTACTAGGTGCAAAAAATATGCATTATCTTGATCCAAAATGGTGCATGTTTAACCCTAATTCTAATAATTTAAGTAGGCTTGATGATAATATTAATTATGCTTGTACTTATGCTGATTGCACTCCACTTGGTGATGGATCATCTTGCAATGATTTGGATGCTAATGGAAAAGCTTCATATGCATTTAATATGTATTATCAAGTTCAAAATCAGAATGACCTAGCTTGTGATTTTGAAGGGTTGGCTATGATTACAACAAATAATATTTCAACTTCTAGTTGTAATTTTATTATTCAGATTAATCCTTCTTCTTCTTCTTTTTTGTTTCCATCTTTTGTTGTTTTCTTGTTTGTAGGAGTTGTTAGTTATTTAAATATATATTGA 1455 0.3292 MICRRVFVIMMMSQILLLWCCYVEGLGVNWGTQATHPLKPDTIVEMLKDNGIEKVKLFDADDETMSALGGSGIEVMVGIPNNQLLDMSNYDRALQWVRKNITRYNFKSGGVNIKYVAVGNEPFLKSYNNSFLNVTFPALQNIQNALNELGLGDSIKATVPSNADIYGYPDPNNAVPSSGIFRPDLSNLMTQIVQFLNKNNAPFTVNIYPFLSLYENDNFPFDFAFFDGVTNPLNDNGISYTNVFDANFDTLVSALKSIGFGNMEILVGEVGWPTDGNKNANIQNALRFYNGLLPRLASNRGTPKRNGYIEVYLFGLIDEDAKAIAPGNFERHWGIFSFDGKPKFPMHISTKHGENRLLLGAKNMHYLDPKWCMFNPNSNNLSRLDDNINYACTYADCTPLGDGSSCNDLDANGKASYAFNMYYQVQNQNDLACDFEGLAMITTNNISTSSCNFIIQINPSSSSFLFPSFVVFLFVGVVSYLNIY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00623 484 SMART X8_cls 370 453 IPR012946 -
Vivi4g00623 484 SUPERFAMILY (Trans)glycosidases 26 347 IPR017853 -
Vivi4g00623 484 FunFam Glucan endo-1,3-beta-glucosidase 8 366 462 - -
Vivi4g00623 484 Pfam Glycosyl hydrolases family 17 26 345 IPR000490 GO:0004553|GO:0005975
Vivi4g00623 484 Gene3D - 367 463 - -
Vivi4g00623 484 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 442 IPR044965 GO:0004553|GO:0005975
Vivi4g00623 484 FunFam Glucan endo-1,3-beta-glucosidase 5 25 354 - -
Vivi4g00623 484 Gene3D Glycosidases 25 356 - -
Vivi4g00623 484 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
Vivi4g00623 484 Pfam X8 domain 370 440 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00623 Vivi-Chr4 13769498 13772631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00623 23 457 Miscellaneous Gene Families AT1G64760 69.425 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00623 - - gmx:102666963 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00623 4 13769498 13772631 Vivi4g00623 4 13769498 13772631 ECH
Vivi4g00623 4 13769498 13772631 Vivi4g00623 4 13769498 13772631 PCT