Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00601 ATGAGAGAGATAATTAGCATTCATATTGGACAAGCTGGAATTCAGGTTGGTAATTCATGTTGGGAATTATATTGCCTTGAACATGGCATTCAACCAGATGGAACAATGCCCAGTGATGAGCCAAAACATGATGATGCATTCAACACATTCTTTAGTGAAATTGGGACTGGGCAATATGTTCCAAGGGCTCTATTTGTTGATCTAGAGCCAACTGTAATTGATGAAATTAGAACTGGTCCTTACAGACAACTCTTTCATCCAGAACAGTTGATTTCTGGTAAAGAAGATGCTGCTAATAATTTCGCAAGAGGACATTATACAGTTGGAAAACAAGTTGAAGAACTTTGTCTAGATCGAATCCGAAAATTAGCAGACAATTGCACTGGCTTGCAAGGTTTCTTGGTTTTCAATGCTGTTGGTGGTGGAACTGGTTCGGGTTTAGGATCATTACTTCTAGAAAGATTGTCGGTAGATTATGGAAAAAAGTCGAAACTCGGCTTCATCATTTATCCTTCTCCTCAGGTTTCGACCGCGGTTGTTGAACCTTACAACACTGTTCTATCCAACCATTCTCACATTGAGCATAGTGATGTAGTTGTGCTTTTAGACAATGAAGCAATCTATGACATTTGCAGAAGATCTTTAGACATAGAGAGACCAACATACACCAACTTGAACCGATTAATATCGCAAAGTATCTCGTCATTAACAACTTCGTTGAGATTCGACGGTGCAATCAACGTAGACATTTCCGAATTCCAAACTAACCTCGTACCTTATCCCCGAATCCATTTCATGCTTTCGTCTTACGCGCCCGTGATATCGTCCGCGAAGGCCTATCATGAGGCGTTGTCCGTTCCCGAGATCACTAGGGCTGTATTCGAGCCGTCGAGTATGATGGTCAAGTGTGATCCAAGACATGGAAAATACATGGCATGTTGCTTGATGTATCGCGGCGATATTGTCCCGAAAGATGTTAATGTCGCAGTTTCAAATATCAAGACAAAGAGAACAGTTCAATTTGTTGATTGGTGTCCAACTGGATTTAAGTGTGGCATAAACTTTCAACCGCCGACCGTTGTACCGGGAGGCGATCTAGCCGAGGTGAGACGCGCGGTTTGCATGATAAGCAACAATACGGCTGTTTCCGAGGTATTCAACAGGATTGATCACAAATTTGATCTCATGTATGCAAAAAGAGCATTTGTTCATTGGTATGTTAGTGAAGGAATGGAAGAAGGTGAATTTTCCGAGGCTAGAGAAGATCTTGCTGCTCTTGAAAAGGATTATGATGAAGTTGGTGAAGATGGTGTAGATGAAGGAGTAGAAGATTATTGA 1338 0.4141 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDEPKHDDAFNTFFSEIGTGQYVPRALFVDLEPTVIDEIRTGPYRQLFHPEQLISGKEDAANNFARGHYTVGKQVEELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFIIYPSPQVSTAVVEPYNTVLSNHSHIEHSDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQSISSLTTSLRFDGAINVDISEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEALSVPEITRAVFEPSSMMVKCDPRHGKYMACCLMYRGDIVPKDVNVAVSNIKTKRTVQFVDWCPTGFKCGINFQPPTVVPGGDLAEVRRAVCMISNNTAVSEVFNRIDHKFDLMYAKRAFVHWYVSEGMEEGEFSEAREDLAALEKDYDEVGEDGVDEGVEDY 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00601 445 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vivi4g00601 445 PRINTS Alpha-tubulin signature 212 224 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 86 99 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 345 358 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 146 158 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 272 287 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 118 126 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 159 170 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 319 340 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 358 377 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 43 56 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 383 399 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Alpha-tubulin signature 420 436 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 Gene3D Helix hairpin bin 382 434 IPR023123 -
Vivi4g00601 445 Gene3D - 267 381 IPR037103 -
Vivi4g00601 445 Pfam Tubulin C-terminal domain 261 390 IPR018316 -
Vivi4g00601 445 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 242 IPR036525 -
Vivi4g00601 445 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525
Vivi4g00601 445 FunFam Tubulin alpha chain 267 381 - -
Vivi4g00601 445 FunFam Tubulin alpha chain 1 266 - -
Vivi4g00601 445 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874|GO:0007017
Vivi4g00601 445 PRINTS Tubulin signature 378 406 IPR000217 GO:0005874|GO:0007017
Vivi4g00601 445 PANTHER TUBULIN 2 436 IPR000217 GO:0005874|GO:0007017
Vivi4g00601 445 SUPERFAMILY Tubulin C-terminal domain-like 244 435 IPR008280 -
Vivi4g00601 445 Gene3D Tubulin/FtsZ, GTPase domain 1 266 IPR036525 -
Vivi4g00601 445 SMART Tubulin_C_4 246 391 IPR018316 -
Vivi4g00601 445 SMART Tubulin_4 47 244 IPR003008 GO:0005525
Vivi4g00601 445 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vivi4g00601 445 FunFam Tubulin alpha chain 382 434 - -
Vivi4g00601 445 Coils Coil 416 436 - -
Vivi4g00601 445 CDD alpha_tubulin 2 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00601 Vivi-Chr4 12908506 12911017 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00601 K07374 - gmx:100780531 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00601 4 12908506 12911017 Vivi4g00601 4 12908506 12911017 ECH
Vivi4g00601 4 12908506 12911017 Vivi4g00601 4 12908506 12911017 PCT