Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00598 ATGGAGAAAGGTAGAATGTTTTTGGTGGGGCTGATGTTCTTGCAGTGTTGGATAGCTATGACAGAAGCTGAGTATTTGAAATACAAAGATCCGAAACAACCTTTGAATACTCGAATTAAGGATCTTATCGATCGAATGACTTTGGAAGAGAAAATCGGTCAAATGGTTCAAATTGATCGCACCGTTGCTTCAGCTGATGTGATGAAAAAATATTACATTGGGAGTGTTTTAAGTGGTGGTGGAAGTGTTCCAAAACCAAAGGCTTCTGCAAAGGATTGGGTTGATATGGTGAATGAGTTTCAAAAAGGTTCACTGTCAACTAGGCTTGGAATTCCAATGATATATGGAATTGATGCTGTTCATGGACATAACAATGTCTATAATGCTACTATTTTTCCGCACAATGTTGGTTTAGGAGCTACAAGGGATCCTCAACTAGTGAAGAGAATTGGTGATGCAACTGCTCTCGAAGTCAGAGCAACTGGAATTCAATATGCCTTTGCTCCTTGCATTGCGGTTTGTAGAGATCCGAGATGGGGTAGATGTTACGAAAGTTATAGCGAAGATCATAAAGTTGTTCAAGCGATGACCGAGATCATTCCAGGTTTACAAGGTGACGTCCCTCCGAATTCACCAAAGGGTGTTCCGTATGTTGCTGGAAACAAGAAAGTAGCAGCTTGTGCAAAGCACTATGTTGGTGATGGTGGAACAACAAGAGGAATCAATGAGAACAACACTGTTGCAACCAGGCATGAATTGCTTAGCATTCACATGCCAGCTTACTATAACTCAATTATCAAGGGTGTCGCAACCGTCATGGTCTCTTACTCGAGTTGGAACGGAGAAAAAATGCATGCTAATCGCGATTTAATCACCGGTTTTCTCAAAAACACGCTACGTTTTAGGGGTTTTGTCATATCAGATTGGCAAGGAATTGACAGGATAACTTCACCTGCTCATGCTAACTATACATATTCGATTGAAGCCGGAGTCAACGCCGGTATTGACATGATAATGATTCCATATAACTACACAGAATTCATAGATGGCTTAAACTTGCTAGTGAAAAGCAATGCTATTCCTATCAGTAGAATCGATGATGCGGTGAAGAGAATTTTGAGAGTCAAGTTTGTGATGGGTCTATTTGAAAATCCATTGGCTGATTACAGTCTCGCTGACCAGCTTGGAAGCCAGGAGCATAGAGAATTGGCTAGGGAAGCTGTGAGGAAATCGTTGGTACTGTTAAAGAACGGTGAAAGTGCGGATGAGCCATTGCTTCCTCTTCCGAAAAAGGCTTCGAGAATACTTGTTGCTGGAACTCATGCTGATAATCTAGGTTATCAATGCGGTGGATGGACGATTGAATGGCAAGGACTGAGCGGCAACAATGTTACTAGTGGTACGACAATTCTGAGTGCGATAAAAAACACAGTCGACAAAGACACTGAGATAGTTTATCAGGAGAATCCATCTCTCGACTACGTTAAATCAAATGATTTTGAATATGCAATTGTGGTAGTTGGCGAGACACCTTACGCAGAAACAAATGGCGACAGCTTAAACTTAACAATATCCGGTAACGGAGCAGACACGATATACAATGTATGCGGCCAAGTGAAATGTGTGGTTGTATTAATCACCGGTAGACCGGTGGTTATGTTACCATATGTTGATATAATTGAAGGACTTGTTGCTGCATGGCTTCCTGGGAGTGAAGGTCATGGTGTTACAGATGTTTTGTTTGGTGATTATGGATTTAGTGGTAAACTTCCACACACATGGTTTAAGACTGTTGATCAGTTACCTATGAATGTTGGTGATTCTCATTATGATCCTTTGTTTCCATTTGGATTTGGTCTTACAACTAAAGCTGCTAAGGATTCTTATTAG 1890 0.4106 MEKGRMFLVGLMFLQCWIAMTEAEYLKYKDPKQPLNTRIKDLIDRMTLEEKIGQMVQIDRTVASADVMKKYYIGSVLSGGGSVPKPKASAKDWVDMVNEFQKGSLSTRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATRDPQLVKRIGDATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDHKVVQAMTEIIPGLQGDVPPNSPKGVPYVAGNKKVAACAKHYVGDGGTTRGINENNTVATRHELLSIHMPAYYNSIIKGVATVMVSYSSWNGEKMHANRDLITGFLKNTLRFRGFVISDWQGIDRITSPAHANYTYSIEAGVNAGIDMIMIPYNYTEFIDGLNLLVKSNAIPISRIDDAVKRILRVKFVMGLFENPLADYSLADQLGSQEHRELAREAVRKSLVLLKNGESADEPLLPLPKKASRILVAGTHADNLGYQCGGWTIEWQGLSGNNVTSGTTILSAIKNTVDKDTEIVYQENPSLDYVKSNDFEYAIVVVGETPYAETNGDSLNLTISGNGADTIYNVCGQVKCVVVLITGRPVVMLPYVDIIEGLVAAWLPGSEGHGVTDVLFGDYGFSGKLPHTWFKTVDQLPMNVGDSHYDPLFPFGFGLTTKAAKDSY 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00598 629 PRINTS Glycosyl hydrolase family 3 signature 294 312 IPR001764 GO:0004553|GO:0005975
Vivi4g00598 629 PRINTS Glycosyl hydrolase family 3 signature 108 124 IPR001764 GO:0004553|GO:0005975
Vivi4g00598 629 PRINTS Glycosyl hydrolase family 3 signature 224 240 IPR001764 GO:0004553|GO:0005975
Vivi4g00598 629 PRINTS Glycosyl hydrolase family 3 signature 178 194 IPR001764 GO:0004553|GO:0005975
Vivi4g00598 629 PRINTS Glycosyl hydrolase family 3 signature 132 151 IPR001764 GO:0004553|GO:0005975
Vivi4g00598 629 Gene3D - 21 396 IPR036962 GO:0004553|GO:0005975
Vivi4g00598 629 Pfam Glycosyl hydrolase family 3 C-terminal domain 412 621 IPR002772 GO:0004553|GO:0005975
Vivi4g00598 629 FunFam Beta-D-glucan exohydrolase isoenzyme ExoI 21 396 - -
Vivi4g00598 629 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 412 621 IPR036881 GO:0004553|GO:0005975
Vivi4g00598 629 Gene3D - 397 624 IPR036881 GO:0004553|GO:0005975
Vivi4g00598 629 FunFam Glycosyl hydrolase family protein 397 623 - -
Vivi4g00598 629 Pfam Glycosyl hydrolase family 3 N terminal domain 47 375 IPR001764 GO:0004553|GO:0005975
Vivi4g00598 629 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 23 626 - -
Vivi4g00598 629 SUPERFAMILY (Trans)glycosidases 26 411 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00598 Vivi-Chr4 12859309 12862800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00598 11 626 Glycoside Hydrolase AT5G20950 73.864 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00598 K05349 - gmx:100819414 1097.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00598 4 12859309 12862800 Vivi4g00598 4 12859309 12862800 ECH