Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00594 ATGGAAGTTCAATTTGTTGTTTTTGTAATGTTTGTTATTGTTGCTTCTTCATCTTGTTTATGTGTTAGATTAACATCAGATGATTTAAGTCACAGCTTCAATGTTCTTGACTATGGTGCTGTTGGGAATGGCAAAAATGATGAATCAAGGGCTTTTATGGATGCATGGAAAGATGCATGTAGTGCAATTTATGAGAGTTCAACACTTCTTATACCTAAAGAAAAAACATTCATGTTGCAACCTATGTGGTTTATGGGTCCTTGCAATTCTCCAACTATTTATGTAAAGCTTGAGGGAATTATCATAGCTCCAAGCACCATTGAAGCTTGGAAATGGCCCAATGAGAATGATAGAGGCTCATGGATACGTTTCTCAGAGATAAGAGGGCTTGTTATTTATGGAGGTGGACTCATTGATGGCAAAGGTGCTCCATGGTGGGATTGCTATTCTAATGCCATGTGTGAAAGTGAAAATCCAACTGCTCTTCATTTTCACGCATGTGAAAATCTAATTCTAAGGGGATTAACTCATATCAACAGCCCAAGAAATCATATAAGTTTAAACGCATGTCATGGCTCACGAATCTCTAAATTGCATATTATCGCGCCAAATGAAAGCCCTAACACTGATGGAATTGACATTGCTGAATCAACCAACGTCATCATTGAGAATTCAAAGATGGAAACTGGTGATGATTGTATTGCAATTAATCATGGTTCCACATCGATTGATATTGTTGGCATTTTTTGTGGACCTGGCCATGGCATAAGTGTTGGGAGCCTAGGAAGAAATGGAGCTGAAGAATCAGTGGAAAAGATTTATGTGCGAAATTGCACCTTCAACAGAACAACAAATGGAGCCAGAATCAAGACATGGATGGTAAAATTTATTTTTCTACATGGTGATATAAAGGGAGGAAATGGGTATGCAAGAAAAGTGACATTTGAGGATATCATACTTATTGAAGCTAACAATCCAGTGATTATTGATCAAGAATACAATCCATATGATAGTTTATACGGTAATGGTGTTAAAGTGAGTGATGTAACCTTTCGCAACATAAGAGGAACATCAATTTCTAAACATGCAATTCAATTACATTGTGATGGATCCATAAGTTGCACAAACATTATACTTGAAGGGATTAACATAACATCTTCAATAGGAGACGAAGTTCACGCATCATGCAAAAATGTAAATGGGATATGTACTTCATGTATTCCATATGTTCCATGTCTTTCTCAAGAATGA 1251 0.3653 MEVQFVVFVMFVIVASSSCLCVRLTSDDLSHSFNVLDYGAVGNGKNDESRAFMDAWKDACSAIYESSTLLIPKEKTFMLQPMWFMGPCNSPTIYVKLEGIIIAPSTIEAWKWPNENDRGSWIRFSEIRGLVIYGGGLIDGKGAPWWDCYSNAMCESENPTALHFHACENLILRGLTHINSPRNHISLNACHGSRISKLHIIAPNESPNTDGIDIAESTNVIIENSKMETGDDCIAINHGSTSIDIVGIFCGPGHGISVGSLGRNGAEESVEKIYVRNCTFNRTTNGARIKTWMVKFIFLHGDIKGGNGYARKVTFEDIILIEANNPVIIDQEYNPYDSLYGNGVKVSDVTFRNIRGTSISKHAIQLHCDGSISCTNIILEGINITSSIGDEVHASCKNVNGICTSCIPYVPCLSQE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00594 416 SUPERFAMILY Pectin lyase-like 29 413 IPR011050 -
Vivi4g00594 416 SMART pbh1 270 291 IPR006626 -
Vivi4g00594 416 SMART pbh1 217 238 IPR006626 -
Vivi4g00594 416 SMART pbh1 374 406 IPR006626 -
Vivi4g00594 416 SMART pbh1 341 368 IPR006626 -
Vivi4g00594 416 SMART pbh1 190 216 IPR006626 -
Vivi4g00594 416 Coils Coil 413 416 - -
Vivi4g00594 416 Gene3D - 15 410 IPR012334 -
Vivi4g00594 416 ProSitePatterns Polygalacturonase active site. 247 260 IPR000743 GO:0004650|GO:0005975
Vivi4g00594 416 Pfam Glycosyl hydrolases family 28 60 401 IPR000743 GO:0004650|GO:0005975
Vivi4g00594 416 PANTHER - 32 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00594 Vivi-Chr4 12838372 12843943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00594 33 401 Glycoside Hydrolase AT5G27530 45.699 5.34e-112 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00594 K01184 - gmx:732657 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00594 4 12838372 12843943 Vivi4g00594 4 12838372 12843943 ECH