Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00545 ATGAACGTCGATCACGATCAACCACCTCACACCACCGCCACCGCCGCCGCCAAAGCGCATCAAGCCTTACAGACCCTAACAGCCGGTCCACTCTCCTCCTCAGTCGCGAAACTCGCCGCTTCCTCCCGGTGTATTCCATCTGAGCGAGACTTCTTCTTCTACCGCAACTTCAACGAATTCAAGGTCCCTATCGATGAAATCGCGCGTGAATCACAGTCGATGTTGGAAGCAATCGGCGCCGCAGCTAATGTGGCGTTTCCGTCTGATGACATAGATGACGGTTATGACTGGCTTGTGAATGTTAACGACGATGTTTTGGAGAGGTACGATGTGTCGGCGGATGAGTTTCGAAGGATTCGGGAGGAGGAGGAGAAGACTGGGCGTGTGAATGAGGCTATGATGGTGGATGATGGATTTGAGTTGGTTTGTGGGAAGAAGAAGAAAGGTGGGAGAGGGAAGGTTGTGGTGGAGGATTCGAAAATTCCGTTGGTGGATCTTGTTACAATGGCGATGAAGGATAAGAGGACGATGGGACCTAAGGCGAAGGTTCCGTTTCATATACCGACGATTCCGAGGCCACAAGATGAGTTTGGTATAATTGTTAATAATACTAATGTGCCCTTTGAGCATGTTTGGTTGCAGAGGAGTGACGATGGACAGACGTTTATTCATCCATTGGAAAAGTTCTCTGTTTTGGATTTTGTTGATAAAGATCCCGGGAGTATTGTGCCACAAAAACCTGCCTCATTAGAAAACACCCCTTTCAAGCTTGTAGAAGAAGTCAAAGATTTAAAGGAGATGGCTGCTAAGCTACGTTCTGTTAATGAGTTTGCGGTTGATTTGGAACATAATCAATATCGGTCTTTCCAAGGTTTGACTTGCCTCATGCAAATATCAACAAGGGCTGAAGATTTCGTTGTCGATACTTTAAAACTTCGCGTTCATATTGGGCCCCATCTAAGGGAAATTTTCAAGGACTCTTCCAAGAGGAAGGTTATGCATGGTGCGGATAAAGATATTTTGTGGCTTCAAAGAGACTTTGGCATTTATGTTTGTAATTTGTTTGACACTGGCCAGGCTTCAAAGGTGTTAAAATTGGAGAGAAATAGTTTGGAGTATCTTCTGCACCATTTCTGTGAGGTTTCAGCAAACAAAGAATATCAAAATGCTGAGTGGAGATTGCGCCCTATTCCTGATGAGATGTTAAGATATGCCAGAGAAGATACACACTATCTGCTGTATATATATGATTCAATGAGGATTAACTTAACTTCCTTGCCAAAGGCACCTGAAAGTTCTGATTCTCCTCTGGTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAGCTATATGAAAAAGAACTTCTGACAGAAAACTCCTACCTTCATATATATGGGTTGCAAGGGGCTGGTTTCAATGCTCAACAGCTTGCCATTGTTTCAGGGCTGTGTGAATGGCGGGACGTTGTTGCTCGTGCAGAGGATGAGAGTACAGGATACATATTGCCAAATAAATCTGTTCTTGAAATCGCTAAACAGATGCCTGTCACTACAAGCAAGCTACGGCGACTGCTGAAGTCAAAGCACCCATATGTTGAACACAATCTTGATACTGTTGTTACCATCATTAGGCATTCAATTCAGAATGCTGATGCTTTTGAAGCAACTGCTCAACAATTGAAAGAAGGACAAGCCACTACTGCGTCGGACGCAGTAGCTGTTACAGATCGAACTGAAGATCCTATATTCCAAACACAGAACCCAAAGGAATCTTTTCAGCATCAAGATACTGAGGTACAAATAAAATTGAAGCCCAATAATCTCGCATCTGGGCTCCCAAGGGAAAGCCTCACTATTTCAGAGCAGACTAGGGATGCAAATGTTGATGCAATCTCTACATTGAAGGGAACTGGAGCAACTGTTCAGGTGCTTAAAAAGCCCGGCGGTGCTTTCGGGGCACTTCTGGGGAGCTCTGCTTCAAAGAGGAAGCTTGGTCTTGATAAAAAGGGCAAAGAAGAGACCAAGCTAGAGCAAATTAGATCTTCAGTCACTCTTCCTTTCCATTCATTTTTGGGTAGCAGTGAGAACTCAAAACCTGTAGTAGAAGCTCCTAGTATACCACCAGACCAACAAAAACCTGTTTCTGATCCAGTTTCCACCTTCGCTCCAGAAGAGATTATAATGCTGGAAACTGATACAGGTGCAGAGGATGATATAGAGCGGGATAATAATTTAGAAAACTCCAATGAAAACGCAAAGAAAAATTTTAGTGCCTCAACTTCGGATGAGGATGAGCCAAAGTCTCTCTCGGAACTGTCATCAAACTTCCAAAAGTGCTTTCAGGCAAACAATCAAAATAACAAAACCAGAAAGCCAAAGAAAACTGAACAAGCTAGTGGCTTATTGCAGTTGACACCGTTTGACTATGAAGCCGCAATGAACCATGTTAAGTTTGGAGAACGAAAGAAAGACCCATCCTCCCAGAACTGTGACGGTCGTGTGGAAAAAGAGAGTTCTGGTGGCAAGAAGAAGCGTTCGACAATAGGAGAGGCAGAACCGAGTGAGCCTAAACAATTTCAACAAGGCAGAAGGCGTCAAGCATTTCCTGCTTCTGGGAATCGCAGTGCAACGTTCCGCTGA 2643 0.4431 MNVDHDQPPHTTATAAAKAHQALQTLTAGPLSSSVAKLAASSRCIPSERDFFFYRNFNEFKVPIDEIARESQSMLEAIGAAANVAFPSDDIDDGYDWLVNVNDDVLERYDVSADEFRRIREEEEKTGRVNEAMMVDDGFELVCGKKKKGGRGKVVVEDSKIPLVDLVTMAMKDKRTMGPKAKVPFHIPTIPRPQDEFGIIVNNTNVPFEHVWLQRSDDGQTFIHPLEKFSVLDFVDKDPGSIVPQKPASLENTPFKLVEEVKDLKEMAAKLRSVNEFAVDLEHNQYRSFQGLTCLMQISTRAEDFVVDTLKLRVHIGPHLREIFKDSSKRKVMHGADKDILWLQRDFGIYVCNLFDTGQASKVLKLERNSLEYLLHHFCEVSANKEYQNAEWRLRPIPDEMLRYAREDTHYLLYIYDSMRINLTSLPKAPESSDSPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQLAIVSGLCEWRDVVARAEDESTGYILPNKSVLEIAKQMPVTTSKLRRLLKSKHPYVEHNLDTVVTIIRHSIQNADAFEATAQQLKEGQATTASDAVAVTDRTEDPIFQTQNPKESFQHQDTEVQIKLKPNNLASGLPRESLTISEQTRDANVDAISTLKGTGATVQVLKKPGGAFGALLGSSASKRKLGLDKKGKEETKLEQIRSSVTLPFHSFLGSSENSKPVVEAPSIPPDQQKPVSDPVSTFAPEEIIMLETDTGAEDDIERDNNLENSNENAKKNFSASTSDEDEPKSLSELSSNFQKCFQANNQNNKTRKPKKTEQASGLLQLTPFDYEAAMNHVKFGERKKDPSSQNCDGRVEKESSGGKKKRSTIGEAEPSEPKQFQQGRRRQAFPASGNRSATFR 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00545 880 CDD Rrp6p_like_exo 251 443 - -
Vivi4g00545 880 MobiDBLite consensus disorder prediction 817 880 - -
Vivi4g00545 880 FunFam Putative exosome component 10 461 556 - -
Vivi4g00545 880 Pfam 3'-5' exonuclease 258 420 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vivi4g00545 880 MobiDBLite consensus disorder prediction 732 804 - -
Vivi4g00545 880 SUPERFAMILY HRDC-like 459 549 IPR010997 GO:0000166|GO:0044237
Vivi4g00545 880 SMART 35exoneu6 255 424 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vivi4g00545 880 SMART hrdc7 474 553 IPR002121 GO:0003676
Vivi4g00545 880 MobiDBLite consensus disorder prediction 861 880 - -
Vivi4g00545 880 FunFam Protein RRP6-like 2 isoform A 189 459 - -
Vivi4g00545 880 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 27 879 IPR045092 GO:0000175|GO:0000467
Vivi4g00545 880 Gene3D HRDC domain 463 555 IPR044876 -
Vivi4g00545 880 MobiDBLite consensus disorder prediction 695 719 - -
Vivi4g00545 880 Pfam HRDC domain 477 544 IPR002121 GO:0003676
Vivi4g00545 880 ProSiteProfiles HRDC domain profile. 474 554 IPR002121 GO:0003676
Vivi4g00545 880 Gene3D - 183 462 IPR036397 GO:0003676
Vivi4g00545 880 MobiDBLite consensus disorder prediction 817 852 - -
Vivi4g00545 880 Pfam PMC2NT (NUC016) domain 40 117 IPR012588 GO:0000176|GO:0006396
Vivi4g00545 880 MobiDBLite consensus disorder prediction 771 789 - -
Vivi4g00545 880 SUPERFAMILY Ribonuclease H-like 190 428 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00545 Vivi-Chr4 12074746 12082967 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00545 K12591 - gmx:100815329 1256.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00545 4 12074746 12082967 Vivi4g00545 4 12074746 12082967 ECH