Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00540 ATGGGGGTTGATGGTTTTGAGGGGAAACAAGGTTCATCATGTTCATGGAGGTTTTTAACAAGGAGGAAGAAGGTTAATTCTCATGTTGAGGACAACAACAACAATTCTCATGGAGTACAACTTGCTAAGGAGTTAACTATTCCTCATCTCATGGCAATTGGGGTAGGTGCAACAATTGGTGCTGGTGTGTATGTTCTAGTTGGAACTGTGGCAAGGGAACATGCTGGACCTGCTTTACCACTTTCATTTATGGTTGCTGGATTTGCAGCTGCTCTTTCAGCTCTTTGCTATGCTGAGTTGGCCAGTCGCTTTCCTTCTGCCGGAAGTGCTTATCACTATGCTTACATATGTCTCGGTGAAGGGGTTGCTTGGTTGATTGGCTGGTCCTTAATTCTGGAATATGGGATTGGTGGAGCTGCTGTTGCTCGCGGCATAACTCCTAATTTGGCTGCACTTATTGGCGGTGTTGACAACTTGCCAGCATTTTTATCCTATCAACATATTCCTGGGATTGATATTGTTGTAGATCCACTTGCAGCAATTATGGTATTCATTGTTACTTGGATCCTTTGTACTGGCATCAAAGAGAGTACAGTGATACAAAGTATATTCACAATGGTGAATATGTGTGCATTGATGTTTGTAATAGTAGTTGGCTGTTATTTAGGATTCAAATCAGGATGGGTTGGATATAAACTTCCAACAGGGTATTTTCCATTTGGGATAGATGGAGTGATTGCTGGTTCTGCAACAGCTTTTTTTGCTTACATTGGTTTTGATGCAGTTGCCAGCACTGCTGAAGAGGTGAAAAATCCTCAAAAAGATTTGCCACTAGGAATTGCAGCTTCTTTGTCTCTATGTTGTGGATTCTATATGATAGTATCCATTGTTGTTGTTGGTTTAGTACCTTACTATGATATCAATCCTAACACCCCTATATCATCTGCATTTGCGGACAACGGAATGCAATGGGCAGCATACATTATAAATGCTGGGGCTATTACAGCACTGTGTTCATCGTTGCTTGGTGGAATGTTGCCTCAGCCAAGAATTTTGATGGCAATGGGAAGGGATGGACTGCTGCCTCCATTTTTTTCTGACATAAATGAGCACAGCTATGTTCCTGTAAAGAGTACCGTAGTTACTGGCCTTGCTTCTGCAGCCTTGGCATTTTTCATGGACGTCTCACAACTTGCCGGGATGGTTAGTGTAGGTACTCTTCTTGCATTCACCGTATCGGCAATATCGGTGTTGATTGTAAGATATATCCCACCAATTGAGGTTTCATTGCCCCCTTCTCTACAAGAACCAATTGATGTAGAGTCAATGGAATACGTTTGGAGCCATTTGGAAACATTTGAAAATGATGCAAAAAAGAAACCCTTAGTTGTTAAAGAAGATGTATCTCTTGATTATCTCCTTATTCCCAAAAATCATGCAATAGACACATTTGTACATAATGGCAATAGAAAAAGAATTGTTGGCTATGTAATAGCATTCATATGCTTAGGTGTATTTATCCTTACATTTGCAGCTGCTTCTACATACTTTCTCAGTTCAGTTAGATTTACATTATGTGGAGTTGGTGGTACGCTTGTTTTGTCTGGCTTTGTCTTCCTAACATGTATAGATCAAGATGATGCAAGACACAAGTTTGGAAAATCTGGAGGTTTCACATGTCCATTGGTGCCACTACTACCTATAATTTGCATTCTTATAAATTCCTATTTACTTATTAGTCTTGGGGGTGCTACTTGGATGAGAGTTTGTGTATGGCTAGCATTTGGAGTTATTATTTATGTTTTCTATGGTCGAAACCACAGCTCTCTCAGAATCAAAGTTGATGATGTCAATTATATCCCTTCAACCTTTCTTGCTTAA 1881 0.4014 MGVDGFEGKQGSSCSWRFLTRRKKVNSHVEDNNNNSHGVQLAKELTIPHLMAIGVGATIGAGVYVLVGTVAREHAGPALPLSFMVAGFAAALSALCYAELASRFPSAGSAYHYAYICLGEGVAWLIGWSLILEYGIGGAAVARGITPNLAALIGGVDNLPAFLSYQHIPGIDIVVDPLAAIMVFIVTWILCTGIKESTVIQSIFTMVNMCALMFVIVVGCYLGFKSGWVGYKLPTGYFPFGIDGVIAGSATAFFAYIGFDAVASTAEEVKNPQKDLPLGIAASLSLCCGFYMIVSIVVVGLVPYYDINPNTPISSAFADNGMQWAAYIINAGAITALCSSLLGGMLPQPRILMAMGRDGLLPPFFSDINEHSYVPVKSTVVTGLASAALAFFMDVSQLAGMVSVGTLLAFTVSAISVLIVRYIPPIEVSLPPSLQEPIDVESMEYVWSHLETFENDAKKKPLVVKEDVSLDYLLIPKNHAIDTFVHNGNRKRIVGYVIAFICLGVFILTFAAASTYFLSSVRFTLCGVGGTLVLSGFVFLTCIDQDDARHKFGKSGGFTCPLVPLLPIICILINSYLLISLGGATWMRVCVWLAFGVIIYVFYGRNHSSLRIKVDDVNYIPSTFLA 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00540 626 PIRSF AA_transporter 481 625 - -
Vivi4g00540 626 PIRSF AA_transporter 25 427 - -
Vivi4g00540 626 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 20 609 - -
Vivi4g00540 626 Gene3D Amino acid/polyamine transporter I 472 620 - -
Vivi4g00540 626 Gene3D Amino acid/polyamine transporter I 41 434 - -
Vivi4g00540 626 FunFam probable cationic amino acid transporter 41 433 - -
Vivi4g00540 626 Pfam C-terminus of AA_permease 558 608 IPR029485 -
Vivi4g00540 626 Pfam Amino acid permease 50 426 IPR002293 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00540 Vivi-Chr4 12038909 12044151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00540 17 610 Organic Solute Cotransporters AT5G36940 62.584 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00540 K13863 - gmx:100820395 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00540 4 12038909 12044151 Vivi4g00540 4 12038909 12044151 ECH