Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06343 ATGGACCTTGAGGCTAGGAGCTTGCAGCCAAGTACGAAGGCAACCCTTCTTGCCAAATTAAGGGAATATAAAACTGATTTGAACAATTTGAAAAATGAAGTTAAAAGAATCTCATCAACTAATGTCAATACGGCTTCTCGAGAAGAGTTGTTAGAGTTAGGAAGGGTTGATTCACTATCGGTATCAAATGATCAAAAAGGAAGACTTTTAATGACTACTGAGAGATTAAATCAATCCACTGATAGAATAACAAACAGCAGAAAAACATTGCTGGAGACAGAGGAGCTCGGTGTCTCTATTCTCCAAGATTTGCATCAACAACGGCAATCTCTACTCCATGCCCATACATCACTCCATGGAGTGGATGATAACATTAGCAAGAGCAAGAAGATTTTGGCTGCCATGTCAAAAAGGATGAGCAGGAACAAATGGATCGTCGGCTCCTTGATGGCAGCTCTGGTCCTTGCAATCATATTAATTCTATATTTTAAGCTTACACATTAG 504 0.3948 MDLEARSLQPSTKATLLAKLREYKTDLNNLKNEVKRISSTNVNTASREELLELGRVDSLSVSNDQKGRLLMTTERLNQSTDRITNSRKTLLETEELGVSILQDLHQQRQSLLHAHTSLHGVDDNISKSKKILAAMSKRMSRNKWIVGSLMAALVLAIILILYFKLTH 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06343 167 Gene3D - 1 45 IPR038407 -
Vivi3g06343 167 CDD SNARE_Vti1 73 132 - -
Vivi3g06343 167 Gene3D - 63 143 - -
Vivi3g06343 167 SUPERFAMILY t-snare proteins 1 38 IPR010989 GO:0016020|GO:0016192
Vivi3g06343 167 Coils Coil 13 40 - -
Vivi3g06343 167 PIRSF Membrin-2 3 164 IPR027027 GO:0005484|GO:0005794|GO:0016192
Vivi3g06343 167 Pfam Vesicle transport v-SNARE protein N-terminus 1 36 IPR007705 GO:0006886|GO:0016020
Vivi3g06343 167 Pfam Snare region anchored in the vesicle membrane C-terminus 74 139 - -
Vivi3g06343 167 FunFam Vesicle transport through interaction with t-SNAREsB 63 143 - -
Vivi3g06343 167 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 162 - -
Vivi3g06343 167 SUPERFAMILY SNARE fusion complex 76 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06343 Vivi-Chr3 169674226 169676772 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06343 K08493 - zju:107419191 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06343 3 169674226 169676772 Vivi3g06343 3 169674226 169676772 ECH