Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06274 ATGGCGACGAGTATAGGGATAATGGATAGCGCCTACTTTGTCGGTAGGAATGAGATTCTGACTTGGATCAATAACCGTCTTCAACTCAATCTCTCTCGCATTGAAGAGGCTGCATCTGGTGCTGTGCAATGCCAGATGATGGACATGACGTATCCCGGGGTTGTGCCGATGCACAAGGTGAACTTTGATGCCAAGAATGAGTATGATATGATTCAAAATTATAAAGTTCTACAGGAAGTGTTCAACAAGTTGAAGATTGAGAAGCATATTGAAGTTAGCAGGCTTATTAAAGGCCGTCCTTTGGACAACTTGGAGTTCCTTCAATGGCTGAAACGATATTGTGATTCTGTTAATGGTGGCATTATGAATGAGAACTATAATCCTGTGGAGCGCAGGGTTAAGGGTGGAAAGGACCGAAATCATAAGGGTTTAAGGAGCTCAAAGTCGCTTCAATCATATACTACGAATAATTCTGGTTCAGGCGACGCACTCAGTCTAAATAGAACCTCAGGGCCTAAGCATTCAAGGTCAAGTGGCGGATCAGATGGGGCAAATTCGTCAGCCGAGATTCAGGCATTGTCCAAGCAGGTTACTGATCTCAAACTCTCGGTGGATCTCTTGGAAAAAGAAAGAGACTTTTACTTTTCAAAACTACGAGATATAGAAATTCTTTGTCAGGCATCAGAACTGGAGAATGAACCTATATCGGTAGCAATTAAGAAGATTTTGTATGCTGCTGATGCAAAAGAGTCAGCATTAGATGAAGCTCAGGCTTACATTAATGAAACATTGGATACTGTTGAAGATGAACCAGAAACTGAAACATGA 828 0.4191 MATSIGIMDSAYFVGRNEILTWINNRLQLNLSRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKNEYDMIQNYKVLQEVFNKLKIEKHIEVSRLIKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRVKGGKDRNHKGLRSSKSLQSYTTNNSGSGDALSLNRTSGPKHSRSSGGSDGANSSAEIQALSKQVTDLKLSVDLLEKERDFYFSKLRDIEILCQASELENEPISVAIKKILYAADAKESALDEAQAYINETLDTVEDEPETET 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06274 275 MobiDBLite consensus disorder prediction 146 187 - -
Vivi3g06274 275 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Vivi3g06274 275 Coils Coil 190 210 - -
Vivi3g06274 275 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Vivi3g06274 275 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 6 258 IPR027328 GO:0008017
Vivi3g06274 275 Gene3D - 182 264 - -
Vivi3g06274 275 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 182 252 IPR004953 GO:0008017
Vivi3g06274 275 Gene3D - 6 134 IPR036872 -
Vivi3g06274 275 FunFam Microtubule-associated protein RP/EB family member 1B 188 263 - -
Vivi3g06274 275 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Vivi3g06274 275 SUPERFAMILY EB1 dimerisation domain-like 189 248 IPR036133 GO:0008017
Vivi3g06274 275 FunFam RP/EB family microtubule-associated protein 6 134 - -
Vivi3g06274 275 MobiDBLite consensus disorder prediction 130 145 - -
Vivi3g06274 275 MobiDBLite consensus disorder prediction 128 187 - -
Vivi3g06274 275 Pfam EB1-like C-terminal motif 207 245 IPR004953 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06274 Vivi-Chr3 165148293 165152436 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06274 K10436 - gmx:100809691 454.907