Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05746 ATGGCACATAATATGCCCTCTCTAAGCGAAGCTCAATTTTCTCCTGCTGAAGAACGTGTGGAGTTAAGTCCGCCAGAATTGAATGATGACGAAGTTAAGGAGTTTCGAAATCTAGTAATGCAACACAAATGGAAAGATGTAATTGAGAAATACAGACAAAGTATTGACTATCACATCATAAATATTATCGGAAGAGGAACAGCATTACACATGGCAGTAAACATGGCAGTAAACAATGAAAACAAAAAGGTGGTGAAAGATCTTGTAAAAGCAATAATAGCACTTCATAATGAAGAGAGTTTGAAAATACAGAATGAAAGAGGTGCCACTCCTCTTCACCTTGCAGCATATAAAGGGTTCACTGATTTATGTGAAGTTATAATTGGAAAAAAAGGTGAAAGGATAGAATTGATTAAAGAGGAAAATGGTGATGGAGAAACTCCACTTTTTTGGGCTGTCCTTGGACATAAAAAATTAGTGTTTGTTTACCTACAACAGTTTCATCCACTTGATCTCAATATTGTTATCAATAAAAATAAAACTAGCATCCTTCATGTTGCCATTCAGAGAGAAATGTTTGATTTGGCAAATATAATAATGTATTTCTACCAAAAACTTATCGCTATGAAGGACAAATATGGCACCCTTCCTCTAGAAATTCTTGCTACTAGGTCATCAGTCTTCCAGGCTAGATATAAGCTATCATGGTGGAAGAAAATTTTATATTACTGTTTTCCTGTAAGCCTCGACGATGCAAAAATTACGATGAAATTGTATCCACGGGAGAATGTAGCTCAAGAAAACACAAAGAATGAGGGAGAAAGGCATTGTTATTTAAATATGCCTTTTTACACTGTTGAAGACTTAGAAGAAGCATACAAAATACCAAATTCTCAAGACTCTTTATTTGGATGGTCAATCCCGTCACTATTTCACTTTGAGGAAATAAAGATTATTAAGAAGAAACTCATTTATGGTAATAAGCTCTTGCATGAATTTATGAAAATACCTATTGATTCATACGTGGGTGGTGAGGATGATCCGCTAATTTTCACAGAAGATGATCGCGAAGAGTTTCAAATAATCCGAGAGAGACTCTTAGGAGATGATACCTCAATGCAAGAGACACCAGAAAATGAAAAAATGGAAAATTCACAAAATAATGATAGACAAGATACAACATTTTCGACATTAGCAATTACATATGATAAGAAAGTGAAAAGTGATGTAATGGACAGAGCATATTTGATTGCAGCATGTCATGGAATAGTTGACATGATGATTGTGCTTGAATCAAATATTACTAGTGTGATCGATGACACTAACTCAAAAAATGAAAATGCATTGCTATTGGCAGTAAAGAATAGGCAACCGCATGTTATTCAACATTTCCTGGAGAGATCACCTAAAGGAGTATTTGATAACCTAAGTCAACAAATTGATAAAAGTGAAAATACCATGTTACACTTGGCAGCATATACCTCACCCGGGGGAGAAAATATTTGGAGGATATCTGGTGTTGCCATGCAATTGATGTTGGACATTAAGTGGTATAAGTACATAAAAGGAATAGTACCAAAGCATTTCCAAAATAGAGGTAACAAAGAAGGAAAAACCCCGAGTGAGATATTTAAGGAAAACCACCAAGAAATTCTAAAAAGAAGTGTTGAATGGTTGAAAGGTACATCAGAGTCATGCTCTGTTGTAGCAGCTCTCATTGTCGGTGTTTCCTTTGCGACATCAGGCAGTGTACCTGGTGGCTATCAGCAAACAGGAGAACCAATATTACAAGGACAACCTGCATTTGAAGGATTCTCTATATCTTCATTAATTGGACTTTACTTCTCTGGAATATCACTCATCATGTTCCTTTCTATACTCACTTTTCGAAAAGAAATTGAAGATTTTCGTATAAAATTGCCAATAAAGCTTTTTTTTGGCTTGAGTTCTCTCTTTGTATCCATTGTTGCTATGTTTGTTTCTTTTTGTTCCGGACATTTCTTTGTGCTTACAGATAAATATCCAAAGGGGGGTATCTTGTTCTATTTATATATTTTAATTTGCTTGCCCGTCGTATTCTACGCAGCTGTTGAGTTTCTGTTATTCAATGATCTTGTTACTGTTATTTTGAAGAAGGTTCCACCACCAAGTGTTAAGGGTGTTCATCTATAG 2172 0.3531 MAHNMPSLSEAQFSPAEERVELSPPELNDDEVKEFRNLVMQHKWKDVIEKYRQSIDYHIINIIGRGTALHMAVNMAVNNENKKVVKDLVKAIIALHNEESLKIQNERGATPLHLAAYKGFTDLCEVIIGKKGERIELIKEENGDGETPLFWAVLGHKKLVFVYLQQFHPLDLNIVINKNKTSILHVAIQREMFDLANIIMYFYQKLIAMKDKYGTLPLEILATRSSVFQARYKLSWWKKILYYCFPVSLDDAKITMKLYPRENVAQENTKNEGERHCYLNMPFYTVEDLEEAYKIPNSQDSLFGWSIPSLFHFEEIKIIKKKLIYGNKLLHEFMKIPIDSYVGGEDDPLIFTEDDREEFQIIRERLLGDDTSMQETPENEKMENSQNNDRQDTTFSTLAITYDKKVKSDVMDRAYLIAACHGIVDMMIVLESNITSVIDDTNSKNENALLLAVKNRQPHVIQHFLERSPKGVFDNLSQQIDKSENTMLHLAAYTSPGGENIWRISGVAMQLMLDIKWYKYIKGIVPKHFQNRGNKEGKTPSEIFKENHQEILKRSVEWLKGTSESCSVVAALIVGVSFATSGSVPGGYQQTGEPILQGQPAFEGFSISSLIGLYFSGISLIMFLSILTFRKEIEDFRIKLPIKLFFGLSSLFVSIVAMFVSFCSGHFFVLTDKYPKGGILFYLYILICLPVVFYAAVEFLLFNDLVTVILKKVPPPSVKGVHL 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05746 723 Pfam Domain of unknown function 557 668 IPR026961 -
Vivi3g05746 723 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g05746 723 Gene3D - 133 230 IPR036770 -
Vivi3g05746 723 Gene3D - 358 498 IPR036770 -
Vivi3g05746 723 PANTHER CASKIN 66 161 - -
Vivi3g05746 723 SUPERFAMILY Ankyrin repeat 74 492 IPR036770 -
Vivi3g05746 723 SMART ANK_2a 444 474 IPR002110 GO:0005515
Vivi3g05746 723 SMART ANK_2a 64 97 IPR002110 GO:0005515
Vivi3g05746 723 SMART ANK_2a 144 174 IPR002110 GO:0005515
Vivi3g05746 723 SMART ANK_2a 107 137 IPR002110 GO:0005515
Vivi3g05746 723 MobiDBLite consensus disorder prediction 369 390 - -
Vivi3g05746 723 Pfam Ankyrin repeats (3 copies) 70 160 IPR002110 GO:0005515
Vivi3g05746 723 ProSiteProfiles Ankyrin repeat profile. 107 128 IPR002110 GO:0005515
Vivi3g05746 723 Gene3D - 49 132 IPR036770 -
Vivi3g05746 723 ProSiteProfiles Ankyrin repeat region circular profile. 107 128 - -
Vivi3g05746 723 MobiDBLite consensus disorder prediction 369 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05746 Vivi-Chr3 131871456 131875023 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05746 463 665 Miscellaneous Gene Families AT1G34050 25.820 6.34e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05746 - - vvo:131656668 1435.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05746 3 131871456 131875023 Vivi3g05746 3 131871456 131875023 ECH