Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05500 ATGCTTCCTCAGCGAATGAAGAAAGCTGTTACCGATAACCCTAAAAAACTTGCAAACCTGATCGATCTCGTTAACCTTCCTTCCACTCTCAGAGACTTCGTCGGTCAATCTCAGACTTCTCGATTAACCTGTTTCATGCGCGTTTGGTCCTACATCAAAACCAACAATCTTCAGGATCCAAATAACAAAAACGTGGTAAACTGTGATGAGAAATTAAAAGGTATTCTACTTGGGAAACCTCAAGTTGAGTTAGCAGAACTTCCAACACTTATCAAGCTACATTTTCCGAAAGAGCCCAAGTGA 303 0.4092 MLPQRMKKAVTDNPKKLANLIDLVNLPSTLRDFVGQSQTSRLTCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKGILLGKPQVELAELPTLIKLHFPKEPK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05500 100 CDD SWIB-MDM2_like 24 95 - -
Vivi3g05500 100 SMART swib_2 20 100 IPR019835 -
Vivi3g05500 100 Gene3D SWIB/MDM2 domain 15 100 IPR036885 -
Vivi3g05500 100 SUPERFAMILY SWIB/MDM2 domain 16 97 IPR036885 -
Vivi3g05500 100 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
Vivi3g05500 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 10 100 - -
Vivi3g05500 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05500 Vivi-Chr3 114778282 114780572 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vivi3g05500 SWIB 3.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05500 - - adu:107471538 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05500 3 114778282 114780572 Vivi3g05500 3 114778282 114780572 ECH