Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05466 ATGGCACCCTTTAATTTATTCTTCCTATTACACCTTCTATTCATTCCAGCAAGTGGCTATGTTCAACCCTTTGAAGATGGGTTCATCTCTGGTGTTATATCTAATAAGGGTCTTGATTTTGCAAAGGATTTGTTGGTAGAGAAAGGTATTGAGTCTATTGTTCTTCTTAAGTTACCAGAGATTGAGAATTCTGCACAAGTTTCACTTGTTGGAACGGCTAAGGTTGTTCTTTCTGATATCACAATTAAGGATGTTCAAGTCAATTCTTCTACGTCTCTTAGGATTGGAGAGAGTGGGATAGTTGTAGTTGTTTCTGGTGCTACTGCTGATTTGAGTATGAAGTGGAAGTATACTGTCAGCTCTTGGTTGATTCCAATTGGAATTTCTGATAGTGGGACTGCTTCAATTAAGGTTAAAGGAATGCAAGTCGGGCTTACATTAAATTTAAAGAACCAAGACCAAGAAGGACGTCTTAAGTTGAGCCTCTTAGATTATGGATGCTATGTCGGAGATTTATCGATAAAGCTGGATGGTGGAGCAGCCTGGCTTTACCAATTGCTAGTTGACGCTTTTGAAGACAATATAGCATCTTCAGTAGAAGAAGGAATTTCGGGGAAAATAAAAGAAGGGATAACAAAGCTTGATAATGTTTTGCAAGCTCTTCCAAAGCAAATCTCATTGGACGAAACTGCTGCGCTAAATGTTTCTTTTGTTGGCAATCCTGTGTTGAGTAATTCTTCTGTTGCAATTGCAATAAACGGTTTATTCACAAGAACAAGCGATATTTTAGCACCTCAAAATTACAAGAAAGGATATAAAGTTTCTTCTGCCTGTGGTGGTTTACCAAAGATGATGAAGATTTCAATACACGAAAACGTGTTCAAGTCTGCTTCCCTAGTTTACTTCAACGCAGGTAAAATGCAATTGATTATCGATGAACTACCCGATCAAGCTTTTCTGAACACTGCTGAATGGAGATTCATAGTTCCTCAATTATACAAGCGATATCCAAACGACGACATGCAGATTAATGTCTCTGCATCTTCTCCACCATTCATACAAGTGGGCTACCAAGATATCGGTGCCACTGTTTCCGTAGATATAACGATTAATGTTCTAGAAGGCGGCGAAGCCATACCTGTTGCATGTATCTCAGTGGATATTAGCGCTTCATGTTCTGTGGAAATTTTAGGAAACAATATTGCTGGTAGAATTAGATTACAAAATTTTTCTGCATACCTGAAATGGAGCAAAATCGGAAAACTGCGCATACATCTTATTCAGTCACTGGTATCAAGTGCTCTCAAAACAATTGTCGTACCGTACTTGAACCGACAATTGAAGAGTGGATACCCGTTGCCAACTGTCGATGATTATGGCTTACAGAATTCTATTATCTTGTACAATTATCCATGGATTTCAGTGTGTAGTGATGCTTCCTTTATAGAAGAAGATTACTAA 1461 0.3833 MAPFNLFFLLHLLFIPASGYVQPFEDGFISGVISNKGLDFAKDLLVEKGIESIVLLKLPEIENSAQVSLVGTAKVVLSDITIKDVQVNSSTSLRIGESGIVVVVSGATADLSMKWKYTVSSWLIPIGISDSGTASIKVKGMQVGLTLNLKNQDQEGRLKLSLLDYGCYVGDLSIKLDGGAAWLYQLLVDAFEDNIASSVEEGISGKIKEGITKLDNVLQALPKQISLDETAALNVSFVGNPVLSNSSVAIAINGLFTRTSDILAPQNYKKGYKVSSACGGLPKMMKISIHENVFKSASLVYFNAGKMQLIIDELPDQAFLNTAEWRFIVPQLYKRYPNDDMQINVSASSPPFIQVGYQDIGATVSVDITINVLEGGEAIPVACISVDISASCSVEILGNNIAGRIRLQNFSAYLKWSKIGKLRIHLIQSLVSSALKTIVVPYLNRQLKSGYPLPTVDDYGLQNSIILYNYPWISVCSDASFIEEDY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05466 486 Gene3D - 32 466 - -
Vivi3g05466 486 Pfam LBP / BPI / CETP family, N-terminal domain 37 212 IPR017942 GO:0008289
Vivi3g05466 486 Pfam LBP / BPI / CETP family, C-terminal domain 283 464 IPR001124 GO:0008289
Vivi3g05466 486 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 245 IPR017943 GO:0008289
Vivi3g05466 486 SMART bpi2_2 279 484 IPR001124 GO:0008289
Vivi3g05466 486 PIRSF Lipid_binding_protein 3 485 IPR030675 GO:0005615|GO:0008289
Vivi3g05466 486 PANTHER OS06G0309200 PROTEIN 6 484 IPR045897 -
Vivi3g05466 486 Gene3D - 36 219 - -
Vivi3g05466 486 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 279 478 IPR017943 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05466 Vivi-Chr3 113462948 113466387 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05466 K05399 - tpra:123917581 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05466 3 113462948 113466387 Vivi3g05466 3 113462948 113466387 ECH
Vivi3g05466 3 113462948 113466387 Vivi7g02684 7 90786384 90788949 PCT