Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05450 ATGGTAGTTTCAGACGAAGAAGTATCCGAAGCAATACACTCACTGTTCCGAGAAACAAACCCTAGAACCAGAACTTTCACCACATTGAACCAAGTGGTTCACGAGCTTCAATCCAAACTCGGTCACGATCTTACCCATAAGCTTGATTTCATTACCTCTCAGATCAATCTCCTTTTCGCTTCTCAACAACCACCTCCGCAAGTTCCGTGTAGGCAGTTACAACATCCGCAACAACCTCCACCACCGCAACAGCAACTTCAACAAACTCAACAAACTCAACAACTTTGTTTCTCTAATAAAGACCGTTTTGCCCTTCACCAAAACCCTAATCCCTATTCTGATTCGGTGTTTCGTAACAACCCTGTTGCTGTTTCTGCCGCTGGTGGTGATGCTACTGTTGCTCAGCCCAATGTGGTTCCCAAGGACAGTACTCAACCTAAGCCAAAGAGAAGAGGTGGTCCAGGAGGTCTCAACAAACTTTGTGGGATTTCGCCGGAACTTCAGGTCATTGTTGGCCAGCCGTCAATGACGAGGACTGAGATTGTGAAGCAACTGTGGGCGTACATAAAGAAAAACAATCTCCAAGATCCTAGCAATAAAAGGAAGATAATTTGCAACAATGAGCTGCGTATGGTGTTTGAGACTGACTGTACTGATATGTTCAAGATGAATAAGTTGCTGGCTAAACACATAATCACCCTTGAACCAACCAAGAAGCCTGCCCCGAAGAAACAGAAGGTAGAAATGGAGTTGGGAGCAAGAAGTGCCGAACCTACTCCTTCTGTAATTATTTCTGATTCACTTGCTAACTTTTTTGGCGTTACTGGACGGGAGATGCTACAGACAGAGGTTCTGAAACGTATCTGGGAGTACATAAAGGTCAATCATCTAGAGGATCCTGTTAATCCTTTGGCAATAATGTGTGATGCAAAGCTTAAGGAGATCTTTGGCTGTGAAAGCATTTCAGCATTGGGGATACCTGAAGTTTTGGGCCGTCATCATATTTTTAGGAGATCATGA 1020 0.4412 MVVSDEEVSEAIHSLFRETNPRTRTFTTLNQVVHELQSKLGHDLTHKLDFITSQINLLFASQQPPPQVPCRQLQHPQQPPPPQQQLQQTQQTQQLCFSNKDRFALHQNPNPYSDSVFRNNPVAVSAAGGDATVAQPNVVPKDSTQPKPKRRGGPGGLNKLCGISPELQVIVGQPSMTRTEIVKQLWAYIKKNNLQDPSNKRKIICNNELRMVFETDCTDMFKMNKLLAKHIITLEPTKKPAPKKQKVEMELGARSAEPTPSVIISDSLANFFGVTGREMLQTEVLKRIWEYIKVNHLEDPVNPLAIMCDAKLKEIFGCESISALGIPEVLGRHHIFRRS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05450 339 CDD SWIB-MDM2_like 161 231 - -
Vivi3g05450 339 ProSiteProfiles SWIB/MDM2 domain profile. 156 233 IPR003121 -
Vivi3g05450 339 Gene3D - 2 60 - -
Vivi3g05450 339 MobiDBLite consensus disorder prediction 69 83 - -
Vivi3g05450 339 MobiDBLite consensus disorder prediction 62 93 - -
Vivi3g05450 339 CDD SWIB-MDM2_like 262 333 - -
Vivi3g05450 339 Gene3D SWIB/MDM2 domain 152 241 IPR036885 -
Vivi3g05450 339 Gene3D SWIB/MDM2 domain 254 338 IPR036885 -
Vivi3g05450 339 ProSiteProfiles SWIB/MDM2 domain profile. 257 336 IPR003121 -
Vivi3g05450 339 Pfam DEK C terminal domain 3 59 IPR014876 -
Vivi3g05450 339 SUPERFAMILY SWIB/MDM2 domain 154 238 IPR036885 -
Vivi3g05450 339 SUPERFAMILY SWIB/MDM2 domain 258 334 IPR036885 -
Vivi3g05450 339 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 259 333 - -
Vivi3g05450 339 SMART swib_2 157 236 IPR019835 -
Vivi3g05450 339 SMART swib_2 258 339 IPR019835 -
Vivi3g05450 339 MobiDBLite consensus disorder prediction 129 158 - -
Vivi3g05450 339 Pfam SWIB/MDM2 domain 161 231 IPR003121 -
Vivi3g05450 339 Pfam SWIB/MDM2 domain 263 333 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05450 Vivi-Chr3 112988317 112991327 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vivi3g05450 SWIB 3.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05450 - - aprc:113854239 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05450 3 112988317 112991327 Vivi3g05450 3 112988317 112991327 ECH