Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05322 ATGAACAACGAAGATGACATATACAAGGTTTGGGAAATCCAAGCTATGCAGGCGAGGCCAGGTGCAGACCAAGCTCAGAAGATGTTAGAGAGAATTGCCAAACAGGTTCAGCCTATTATGCGTAAACACAATTGGAGCGTCAAGCTTCTCTCGGAGTTCTGCACAAGGGATGCATATTATCTTGGGTTTAATTATGGAGGTGGAAGACAGTGTAATCTCATTCAGTTGGCGCTACGGACAAGTTCAGAACGGGATTCTAACTTTTTACCATATGATGAAGTTTTAGATACCATGCTTCACGAGCTTTGTCATAACGAACATTATTCTCATAATACAAACTTCTACAAGCTATGGGATCAACTTAGAAAGGAATGTGCTGAATTGATGGCTAATCAGATAACTGGCTTTGGCTTTGATCTCCCAGGAAGGCGCCTGGGTGGTTATTCTACTCAACCTCCTCCACGTAAAACTGCACTTTCTGCTGCAGATAAGAGACCGTGGTTGGGATATCGTATTGGTGGTGATAGTCTTATAATGAAGACACTTACTCCAGGGCAAGCTGCTGCGCTGGCCGCAGAAAGGAGATTACAGGATGACTTATGGTGTCGTTCTCAATCTTCATATCACGAAGCTGAAAACCATATAAAAAAGAAGATAATTGTTGGAAGCTCAAAACCATCTGACAATTCTACTCTAGCTTTGGATCCGACATCTCGAAAAAGAAGTTGGGACAAGGATTCAAGTTTATCACTTTATTCATCTAGTAACCCTAAATTTGTTGATTTGACAATGGATACACCAAGTTCGTCTAGGTCGCTATCTAACAATAATAGAAGACTTCATTCCGAAGAAACTGCAATGTGGCAGTGTCTGACGTGCACTCTGTTAAACAAATCATTAGCCCCTATATGTGAATTGTGTGGAACACAACAGCCAAAAGTTGTTACTACCAAACACTACACTTGGTCTTGTAAATTCTGTACGATGGGAAATAGTGCAAAGTTGGAGAGATGCTCAGCGTGTGACGAGTGGAGATACTCTAATGGCCCCAGCCTTGGCCCTTGA 1065 0.4207 MNNEDDIYKVWEIQAMQARPGADQAQKMLERIAKQVQPIMRKHNWSVKLLSEFCTRDAYYLGFNYGGGRQCNLIQLALRTSSERDSNFLPYDEVLDTMLHELCHNEHYSHNTNFYKLWDQLRKECAELMANQITGFGFDLPGRRLGGYSTQPPPRKTALSAADKRPWLGYRIGGDSLIMKTLTPGQAAALAAERRLQDDLWCRSQSSYHEAENHIKKKIIVGSSKPSDNSTLALDPTSRKRSWDKDSSLSLYSSSNPKFVDLTMDTPSSSRSLSNNNRRLHSEETAMWQCLTCTLLNKSLAPICELCGTQQPKVVTTKHYTWSCKFCTMGNSAKLERCSACDEWRYSNGPSLGP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05322 354 ProSitePatterns Zinc finger RanBP2-type signature. 322 341 IPR001876 -
Vivi3g05322 354 ProSitePatterns Zinc finger RanBP2-type signature. 288 307 IPR001876 -
Vivi3g05322 354 SMART zf_4 286 310 IPR001876 -
Vivi3g05322 354 SMART zf_4 320 344 IPR001876 -
Vivi3g05322 354 ProSiteProfiles Zinc finger RanBP2 type profile. 318 347 IPR001876 -
Vivi3g05322 354 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 351 - -
Vivi3g05322 354 SUPERFAMILY Ran binding protein zinc finger-like 283 311 IPR036443 -
Vivi3g05322 354 Pfam WLM domain 9 197 IPR013536 -
Vivi3g05322 354 ProSiteProfiles Zinc finger RanBP2 type profile. 284 313 IPR001876 -
Vivi3g05322 354 Gene3D - 280 321 - -
Vivi3g05322 354 MobiDBLite consensus disorder prediction 225 246 - -
Vivi3g05322 354 ProSiteProfiles WLM domain profile. 1 197 IPR013536 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05322 Vivi-Chr3 108812554 108813907 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05322 K22685 - gmx:100795976 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05322 3 108812554 108813907 Vivi3g05322 3 108812554 108813907 ECH