Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05257 ATGGACAAAGGCAAAGGAGGAAGGCACCGTGAAACATCTGATACCGATGATCACTCCCACCGCAACAAAGCCGACGATGCTTCAGGAGTTAAAAACAACGGAGTTAACGATAAGAAGCTGCCACCAGCACCGCCAATGCCGTCAGTTCAAAATGCGGGTGCGGTTTCGTTTCCAGGGGCCGGTGGAAATGGGCAAAAGCAACCATTTTCTGGTGTTGGTGCAGGAAGTACTTCATTTTTTTTGAGTAATTTGCACTGGTGGACTACTGATGCTGACGTTGAATACGAGCTTTGTAAGTATGGAGAAGTTAGGGATTTAAGTTTTTTTCTTTATGATGATTGTGGAAAATCCAAAGGGTATTGTAAGGTTGAGTTTTATGATCCTTTAGCTGCAGCTGCTTGTAAGAAAGGGTTGAATGGGCATAGGTTTAATGGTAGGCCGTGTGTTGTTTCTTCGTCTTGGACGCCTTTTCTTGGTACGAATCAACCTGATGTGGATAAAAAGGGAATGAAGGAGCCTAATCAGGTTGAGGCTACTAAGCCTGGTGATGAAAATGGTGGGAGAGGTGGTATCAAAGAAGGTGGAGATGGGAATAATCCGGGAAAGAAGGGACCTGATGAGGTTAAGGCTACTAAGCCTGGTGTTGGTAATGGTGGGAGAGGTGGTGCCAAAGAAGGTGGAGATGGGGATAATAGAGGTTATGGAAGAGGTAATTGGGGGAGAGGGAACAATCTTGGGAGGGGGAGTAGAGGACATGGTAATCTGATGAGGAATCGGGGCGGTGGAATGGGTGGTAGATCGATCATGATGGGTGGTTCCATGGGTAGAATGGGTGGTGCTGCCCCACGAATGTTGATGCATCCTCGGATGGGTCCTATGAGTAGAATGGGTGGGGATGCATGCTTTCCCGGTGGCCCGATACCTCAGTCCTCTGGGAATTTGCCTTCATACCGTGGTGTTGGTTTGCGCGGTGTAGCACCTTATGGTAATTATTCCTTCTGTGGAAGAGGGATGCCTATGCGTGGTAAGGGGATGATTCCGCGGTCAGGTATGGGTGGTCCTAATATGGGAAGATTGGGTGGTGATGAACATGGTGGAGGCAAGGCTGCAGAGGCAAGTAATGGGGAGGAAGCTGCATCTGATCATCAGAACGATGAGGTGGATCGTGATAGAGGTGATTCGCCTAAAGCTATGCGCGAAAAAGATAGAGGATCGGAGAGGGATTTCCCAGTTACATCTGAAAGAACATTCAAGGATGATAGAGTTCCTGTATTTGACAGATATGTGCCAAGTGAAAATGATTCGGAGCATGACCATGAAGAAATAGGGAATGTTGATGATAGAGAAATTAGTCGTGCACGATCTCGGGATAGTGATATAGATTGTGAACAATCACGATCTCGAGACCATGTCCCTGATCGCGAAAGAGGTTGGAATCGTGATTTGCCTAATGCTATGCGCGAAAAAGATAGAGGATCCGAGAGGGATTTGTCAGGTACATCTGAAAGAATATTCAAGGATGATAGAGTTCCTGAATTTGACAGATATGTGCCTAGTGAAAATGATTCGGACCATGACCATCCAGAAATAGGGAATCTTGATGATAGAGAAATTAGTCGTGCTCGATCTCGGGATAGTGATATAGACCGTGAACGTTCACGATCTCGAGACCATGTCCGTGATCACGAAAGAGGTTGGAATCGTGACAGGCAGAGGCAAGATAGGGACGGATATGCTGATCATCCTAGACTCACAGACCACGCGCCACAGCACAATGATGAGCGGGAGAGGGGACAGTCAACAAAGCCTAGCATCAAATCACGATTATCATACCCGACTAGAAAATATTCACATAATGGAAAAAGGAGATAG 1872 0.4669 MDKGKGGRHRETSDTDDHSHRNKADDASGVKNNGVNDKKLPPAPPMPSVQNAGAVSFPGAGGNGQKQPFSGVGAGSTSFFLSNLHWWTTDADVEYELCKYGEVRDLSFFLYDDCGKSKGYCKVEFYDPLAAAACKKGLNGHRFNGRPCVVSSSWTPFLGTNQPDVDKKGMKEPNQVEATKPGDENGGRGGIKEGGDGNNPGKKGPDEVKATKPGVGNGGRGGAKEGGDGDNRGYGRGNWGRGNNLGRGSRGHGNLMRNRGGGMGGRSIMMGGSMGRMGGAAPRMLMHPRMGPMSRMGGDACFPGGPIPQSSGNLPSYRGVGLRGVAPYGNYSFCGRGMPMRGKGMIPRSGMGGPNMGRLGGDEHGGGKAAEASNGEEAASDHQNDEVDRDRGDSPKAMREKDRGSERDFPVTSERTFKDDRVPVFDRYVPSENDSEHDHEEIGNVDDREISRARSRDSDIDCEQSRSRDHVPDRERGWNRDLPNAMREKDRGSERDLSGTSERIFKDDRVPEFDRYVPSENDSDHDHPEIGNLDDREISRARSRDSDIDRERSRSRDHVRDHERGWNRDRQRQDRDGYADHPRLTDHAPQHNDERERGQSTKPSIKSRLSYPTRKYSHNGKRR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05257 623 SMART rrm1_1 78 151 IPR000504 GO:0003723
Vivi3g05257 623 MobiDBLite consensus disorder prediction 1 68 - -
Vivi3g05257 623 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 23 477 IPR034772 -
Vivi3g05257 623 MobiDBLite consensus disorder prediction 159 263 - -
Vivi3g05257 623 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g05257 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 148 IPR000504 GO:0003723
Vivi3g05257 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Vivi3g05257 623 CDD RRM_CFIm68_CFIm59 80 151 - -
Vivi3g05257 623 SUPERFAMILY RNA-binding domain, RBD 49 155 IPR035979 GO:0003676
Vivi3g05257 623 MobiDBLite consensus disorder prediction 345 623 - -
Vivi3g05257 623 Gene3D - 2 156 IPR012677 -
Vivi3g05257 623 MobiDBLite consensus disorder prediction 378 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05257 Vivi-Chr3 106788184 106790055 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05257 K14398 - gmx:100782869 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05257 3 106788184 106790055 Vivi3g05257 3 106788184 106790055 ECH