Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05249 ATGCACAGACCATCAACAATGGCGGCCTTCACGGTGGCGATTATAATCCTCTCTGCCGTTATCACAACCTCCACCGCACACAATATCTCACACATCCTCTCCCAAACCCCCGAGTTCTCCACCTTCAACCACTACCTAACCCTAACACACCTCGCTTCAGAAATCGACCGTCACACAACAATCACCGTCCTCGCCGTCGACAATGCCGCCATGGACGACCTCATAGCAAAGGACCTCTCGATCTCCACCGTGAAAAACATCCTCTCCCTCCACGTCCTCGTCGACTACTTCGGCCCCAAAAAGCTTCACCAAATCACAAACGGAACCGCTCTCGTCTCCACATTGTACCAAGCCTCAGGCTCCGCACCGGGAGCCTCGGGACTAGTCAACATCACCGATCTTCGCGGCGGAAAAGTCGGATTCGGCGCTCATGAAAACGACGGAACCCTACCTGCTATCTACGTCAAATCAGTTAAAGAAATTCCTTACAACATTTCCGTTATTCAGATTAGTCAAATTATTCCCTCCGCCGCAGCGGAAGCACCTACACCAGCACCTAAAAAACAAAACCTCACCGAGATTATGTCCAAACACGGTTGCAAAATCTTCGCCGACACTCTTTCCGCTTCACCCGAAGCTTACGGCATTTTCACCGACAATCTCGACGGTGGATTAACCATTTTCTGTCCAGCCGACGATGCTTTCAAAGGCTTTCTTCCGAAATTCAAAAACCTAACCGCCGCCGGTAAAATCGCTCTCCTCGAATTTCACGGTGTACCGATCTATCAATCTATTGCTAGTCTGAAATCTAACAATGGAGTGATGAACACTCTTGCTACCGACGGTGCTGAAAAGTACGATTTCACCGTTCAGAATGACGGCGATGAGATTACATTGAAGACAAAGCTTGTAACTGCTAGGATCACCAACACGATTATTGATGAGCAGCCGCTTGCGATCTTTACTATTTCGAAGGTTCTTCTTCCAGAGGAATTGTTTAAGGCTGATGCTCCGAGTCCTTCTCCGGCTCCGGCGCCGGAGCCTGCAGCTGCTGACGCTCCCGCTCCTGCGGCGGAGCATAAGAAGAAGAAAAAGAAGGCTGCCGATGCGCCAAGTGAGGATGAATCTGATGCGCCGGCTGATTCGCCCGAAGATGCAGCTGATGACACTGCCGACGATAGCGGCGCCGTTAGGTTCGGCGGTATCGTAGCTTTGGTTTTGGCTTTGGCTTTTGGAATTCTAGCACTGTGA 1251 0.5068 MHRPSTMAAFTVAIIILSAVITTSTAHNISHILSQTPEFSTFNHYLTLTHLASEIDRHTTITVLAVDNAAMDDLIAKDLSISTVKNILSLHVLVDYFGPKKLHQITNGTALVSTLYQASGSAPGASGLVNITDLRGGKVGFGAHENDGTLPAIYVKSVKEIPYNISVIQISQIIPSAAAEAPTPAPKKQNLTEIMSKHGCKIFADTLSASPEAYGIFTDNLDGGLTIFCPADDAFKGFLPKFKNLTAAGKIALLEFHGVPIYQSIASLKSNNGVMNTLATDGAEKYDFTVQNDGDEITLKTKLVTARITNTIIDEQPLAIFTISKVLLPEELFKADAPSPSPAPAPEPAAADAPAPAAEHKKKKKKAADAPSEDESDAPADSPEDAADDTADDSGAVRFGGIVALVLALAFGILAL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05249 416 MobiDBLite consensus disorder prediction 356 373 - -
Vivi3g05249 416 SUPERFAMILY FAS1 domain 32 174 IPR036378 -
Vivi3g05249 416 Gene3D FAS1 domain 25 168 IPR036378 -
Vivi3g05249 416 Gene3D FAS1 domain 169 330 IPR036378 -
Vivi3g05249 416 Pfam Fasciclin domain 218 329 IPR000782 -
Vivi3g05249 416 Pfam Fasciclin domain 37 105 IPR000782 -
Vivi3g05249 416 ProSiteProfiles FAS1/BIgH3 domain profile. 26 174 IPR000782 -
Vivi3g05249 416 SUPERFAMILY FAS1 domain 185 330 IPR036378 -
Vivi3g05249 416 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 9 404 IPR033254 -
Vivi3g05249 416 FunFam Fasciclin-like arabinogalactan protein 2 25 167 - -
Vivi3g05249 416 FunFam Fasciclin-like arabinogalactan protein 10 180 330 - -
Vivi3g05249 416 ProSiteProfiles FAS1/BIgH3 domain profile. 187 327 IPR000782 -
Vivi3g05249 416 SMART fasc_3 226 330 IPR000782 -
Vivi3g05249 416 MobiDBLite consensus disorder prediction 336 393 - -
Vivi3g05249 416 MobiDBLite consensus disorder prediction 374 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05249 Vivi-Chr3 106309531 106311086 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05249 - - cam:101502229 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05249 3 106309531 106311086 Vivi3g05249 3 106309531 106311086 ECH