Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05245 ATGTCTCTTGGGTATGCTGAGAAACTTTCCTTCATAGAAGATGTAGGCAACGTTGGAATGACTGAACATTTCGACCCATCTACCATTTTGCGTGAAAAAATAGAGCAACTCGCTGTTATGATTAAAAAGAGTAAGCATCTAGTAGTGTTTACAGGCGCAGGAATATCAACTTCTTGTGGTATACCTGATTTTCGAGGTCCCAAGGGAATTTGGACGCTTCAGCGTGAAGGTAAAGCCTTGCCGGAAGCATCATTACCATTTCACCGTGCGGTGCCAAGCTTGACTCACATGGCTCTCGTTGAATTAGAAAAGGCTGGTATTTTGAAGTTTGTTATCAGCCAGAATGTCGATGGTCTCCATCTTCGATCTGGAATACCAAGGGAAAAACTGTCTGAACTGCACGGGAATTCCTTTATGGAAACTTGCCCTTCTTGTGGAGCTGAGTACTTTCGAGATTTTGAGGTAGAAACTATTGGTTTAAAGGAGACATTGCGGCGCTGTTCAAATGCAAAATGTGGAGCAAGACTTAAGGATACAGTCCTTGACTGGGAGGATGCGTTGCCTCCGAAGGAGATGAACCCTGCAGAGAAGCACTGCAAACAGGCAGATATAGTGTTATGCTTAGGGACAAGTCTGCAAATAACTCCAGCCTGCAACTTGCCTCTTAAAGCACTTCGTGGCGGAGGTAAAGTTGTCATTGTAAATCTCCAGAAAACCCCAAAGGACAAAAATGCCTCTCTAGTCATTCATGGGTTTTCTGATAAGGTGATTGCAGGTGTCATGGAGCACCTAAATCTGCGGATTCCTCCTTTCATCAGGATTGACCTTTTCCAGATTATTGTAGTGCATGCTTTGAGCAACGATAAAAAATATGTGAACTGGACACTCCAAGTTGCAAGTTCGCATGCCCAGAAAGCAGCATTGCCTTTCATCAAGTCTGTTGAGGTTTCCTTCTCGGACAAGGAAGGTTTCAAAGAAGCCATTCTGGATAAGCATCCATTTCGGCTTAAAAGAAGAACAGCATATAACAAAACATTTGAAATGGTTCTAAACCTCAATTTTGGCGATGGCTGCGGTTGCTCGTCCCTTGAAGTTGATGTCCCGATTGATTTTATGAGTTCAACTGACTGCTTCAACTTCGACAAGGATGTCATATTCCAAAAGCTGAGAGACAAGGCAGTCATCGAGTCAAAATGCGGTCAGAATGCCGTTATTGAGAGAAAAACCACCTCGTCTCCTAGAAGCGACATTACTACCTATGCAGTTGTAACTAATCTTGTTCATTACAGCAAACCAGTCCCCGATTCTCTAACCAATGGTGATCATAAAAAGAGAAAAGATCTCATGATCGGTACAGGCTCGTCTTGGAAGCGTTCAAAAGTTTCTAAGGGTAAATCCATATCAAAGAAGGAATGA 1416 0.4301 MSLGYAEKLSFIEDVGNVGMTEHFDPSTILREKIEQLAVMIKKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKALPEASLPFHRAVPSLTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLSELHGNSFMETCPSCGAEYFRDFEVETIGLKETLRRCSNAKCGARLKDTVLDWEDALPPKEMNPAEKHCKQADIVLCLGTSLQITPACNLPLKALRGGGKVVIVNLQKTPKDKNASLVIHGFSDKVIAGVMEHLNLRIPPFIRIDLFQIIVVHALSNDKKYVNWTLQVASSHAQKAALPFIKSVEVSFSDKEGFKEAILDKHPFRLKRRTAYNKTFEMVLNLNFGDGCGCSSLEVDVPIDFMSSTDCFNFDKDVIFQKLRDKAVIESKCGQNAVIERKTTSSPRSDITTYAVVTNLVHYSKPVPDSLTNGDHKKRKDLMIGTGSSWKRSKVSKGKSISKKE 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05245 471 PANTHER NAD-DEPENDENT HISTONE DEACETYLASE HST4 33 265 - -
Vivi3g05245 471 Gene3D - 36 263 - -
Vivi3g05245 471 ProSiteProfiles Sirtuin catalytic domain profile. 27 267 IPR026590 -
Vivi3g05245 471 MobiDBLite consensus disorder prediction 434 471 - -
Vivi3g05245 471 FunFam NAD-dependent protein deacetylase SRT1 135 184 - -
Vivi3g05245 471 Gene3D - 135 184 - -
Vivi3g05245 471 FunFam NAD-dependent protein deacetylase sirtuin-6 isoform X2 36 134 - -
Vivi3g05245 471 MobiDBLite consensus disorder prediction 437 451 - -
Vivi3g05245 471 Pfam Sir2 family 52 75 IPR003000 GO:0070403
Vivi3g05245 471 Pfam Sir2 family 87 216 IPR003000 GO:0070403
Vivi3g05245 471 SUPERFAMILY DHS-like NAD/FAD-binding domain 6 292 IPR029035 -
Vivi3g05245 471 CDD SIRT7 45 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05245 Vivi-Chr3 106160002 106168047 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05245 K11416 - gmx:100803586 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05245 3 106160002 106168047 Vivi3g05245 3 106160002 106168047 ECH