Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05236 ATGAAGCCGCGAAAACTGTATTCTTCGGCACTCTCACGTGCTCTAACACGTGCCCTCAGCTCTTCAACCGCCACAACCACACCGTCTCAATGCGGATCGGCGTTTCCCTTGAAGACGGTTACCGTCGCAAACTTTGAGCCGTCGTTAGCGGAGCTCCGGCACCATGTCCGCTCGTCAGACTTCGTCGCCATCGACCTCGAGATGACCGGCGTAACTAGTTCTCCGTGGCGTGAGTCCTTCGAGTTTGACCGCTCCGACGTCAGGTATCTCAAGATCAGAGACTCCGCGAGCAGGTTCGCCGTCGTTCAGTTCGGCGTCTGTCCGTTCCGATGGGATTCGTCTAACCAGTCCTTTGTAGCTTATCCGTACAATTTCTTTGTTTTTCCACGTCAGGAGCTTGCTGGTTTAGGCCCATGTAATGAGTTTCTCTGTCAGACTACATCGATAAATTTCTTGGCTAAATACCAGTTTGATTTCAATGCATTCATACATGAAGGAATATCTTATTTGTCCAGAGAACAAGAAAGGGAAGCAATAAAGAGTTTGAATTCAGTGCATGATAGTGAGTGCTCATACATTTCTAAATTAAATGATGTTAGAGACCTACCATCTGTCAACATGGCAGACATTTTGTTCACTGAGCGAATGAAAAATAAGTTTAGTGAGTGGCGTGATGGATTATCACAGGAGCAAAGTCAACCAGACCTAATTCAAGGAACTCGAAAAGACTCGAAACAACGATTTGAAGTGATTTTCTTTAAGAAGCATCCAGCTCTCAAGCTTGATGGATTCACCTCCCGCCAGCTTAAGTTAATTCAGTTGGTCATCAAAAAACACTTCAAAGATCTTTCTTATATCAATGTCAACAATGCCGGTTCTAGTTCCCAACAAATAGTTGTATATACAGACTCGGAGGAGGAACTAAACTTACTTCTGAAGGAGGTAAAGGAGGAAAGTCTCAGGGCCAAAAAGATGAAGATCCAAGCTGCAGTTGGATTTCGCCATGTTATTGATCTCCTTTCGTCAGAACAGAAGTTGATAGTTGGTCATAACTGTTTTCTAGATACTGCTCATGTATACAACAAATTTATCGGGCCTCTTCCTGGGACTCTTGAAGAGTTTGTTGCCTCAGTTAACAAGTGCTTTCCACATATTGTTGACACCAAATTACTCATGAACGCTGATAATATGCTCCAAGCAAGAATGAAAAAGTCCAGAAAATCATTGGGTTCTGCATTTTCTGTGTTTTGTCCACAAATTGCTGCAGGCTCCAAAAGCAATGAGCTAGTTTCACCATCCTATGTAAAAATAGATGTTGAAGTTGATGATTCAAGATCGTCCAGCTGGAACCCTGGAGGCAAGCATGAGGCAGGGTATGATGCTTTCATGACTGGATGCATCTTTGCCCAGTTATGCTCTGATTTAGGAGTTGATTTTAAACTCCATGAATCTTTAAAATTAGCTTCCAATGATAAACTACAGAAATACATTAATCATCTATATCTAAGTTGGATGCATGGGGATATTATTGATCTAAGTACTGGTGATAAGGTTGCAAATTCTTCACCAAGCTATAGCCCCAAAAGCCGGTACCCAAATATTTTGTTTGAGAACATTGTTATTATATGGGGATTTCCCTCTAACGTGAAATCAAGCGATGTACGTGAGTGTATATCTAAAGTTTTTGGCCTAACTTCTGTTGTTTCTGTATACCAATTGGATGCAACAGCAGTGTTCGTTCAGTTTAGCAAGACGGAATTAGTTTCCGACTTTCTTTTATTGAAGGAAAACTTAGAGAGAAGTAATGGTCCAATCTCTGTTTTGCATCCGCTGTCAAAACTTTTGGATGGTGGAAATACATGTGCTGCTAATTATGATACTTATAAAGAAATCTGTAGTTCACCCTTGTCAGAAGATTTATTTGCTGATCAGGCAAATGCAGTTAGCGTGACGCCGAAGACTAAATTGATTGAATTTAAGGTAGCATTGGGGAGTGAAGAACATGAAAATCCAATTGTACAAGATAATGTAACTGATGTTGCCATGAATTTCGTTGAAAAAATCAAGCCAAACTCAATTGATCAGTTAAGAAATGTTCAATCTACTGGGCATGCCTCCTCATTTGAGATTGAAGATTCCGGTGTTGCCGAAGCTAATTTATGA 2163 0.4115 MKPRKLYSSALSRALTRALSSSTATTTPSQCGSAFPLKTVTVANFEPSLAELRHHVRSSDFVAIDLEMTGVTSSPWRESFEFDRSDVRYLKIRDSASRFAVVQFGVCPFRWDSSNQSFVAYPYNFFVFPRQELAGLGPCNEFLCQTTSINFLAKYQFDFNAFIHEGISYLSREQEREAIKSLNSVHDSECSYISKLNDVRDLPSVNMADILFTERMKNKFSEWRDGLSQEQSQPDLIQGTRKDSKQRFEVIFFKKHPALKLDGFTSRQLKLIQLVIKKHFKDLSYINVNNAGSSSQQIVVYTDSEEELNLLLKEVKEESLRAKKMKIQAAVGFRHVIDLLSSEQKLIVGHNCFLDTAHVYNKFIGPLPGTLEEFVASVNKCFPHIVDTKLLMNADNMLQARMKKSRKSLGSAFSVFCPQIAAGSKSNELVSPSYVKIDVEVDDSRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGVDFKLHESLKLASNDKLQKYINHLYLSWMHGDIIDLSTGDKVANSSPSYSPKSRYPNILFENIVIIWGFPSNVKSSDVRECISKVFGLTSVVSVYQLDATAVFVQFSKTELVSDFLLLKENLERSNGPISVLHPLSKLLDGGNTCAANYDTYKEICSSPLSEDLFADQANAVSVTPKTKLIEFKVALGSEEHENPIVQDNVTDVAMNFVEKIKPNSIDQLRNVQSTGHASSFEIEDSGVAEANL 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05236 720 Pfam CAF1 family ribonuclease 40 468 IPR006941 -
Vivi3g05236 720 Coils Coil 301 321 - -
Vivi3g05236 720 SUPERFAMILY Ribonuclease H-like 38 479 IPR012337 -
Vivi3g05236 720 Gene3D - 39 202 IPR036397 GO:0003676
Vivi3g05236 720 Gene3D - 286 517 IPR036397 GO:0003676
Vivi3g05236 720 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 40 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05236 Vivi-Chr3 105765045 105771116 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05236 K01148 - gmx:100784997 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05236 3 105765045 105771116 Vivi3g05236 3 105765045 105771116 ECH