Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05207 ATGAAAATCACTGTCATGACCGCTGATGAACAAATTCTCAACTTGGATGTCGATCCCAACGAATCTGTTGAAAACGTTAAAGCCTTGCTTGAGGTTGAGACAAGTGTGCCTATTCAGCAACAACAGATTCTTTTCAATGGAAATGAGGTGAACAATTCTCAGAAATTGAGTGCCATTGGTGTTAAGGATGATGATTTGCTAATGATGACCGTCTCTAGGGCCGGGGCCGGTGCTGGTGCTTCTAGTGGATCTGCCAATGATTTGAGCTTCAATACTGATGGATCTGCTATAAACCCTGGTGCTTTTCAGCAGCACTTTAGACGCGATTCTAATTTGATGGGTCAGCTCTTCCAGAATGACCCGGAGTTGGCACAAGTTATTCTGGGGAATGATCTCAATAAAATCCAGGAAATTTTGCGATTGCGTCATCGCCAAAGAGATCAATTACGGCGTCAAAAAGAAGAAGAGATGGCTCTTCTTTATGCCGATCCTTTTGATGTTGAAGCACAAAAGAAGATCGAAGCTGCCATCCGCCAGAAAGGAATTGATGAAAATTGGGAAGCTGCACTTGAACATAATCCTGAAGGTTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGCGTACCAATGAAGGCATTTGTTGATAGTGGAGCACAGTCTACCATTATATCAAAAACCTGCGCTGAGCGTTTAGGATTACTGAGACTTTTAGATCAGCGTTACAAAGGAGTCGCTCACGGAGTTGGCCAAACCGAAATCTTGGGTAGAATACATGTAGCTCCAATCAAGATTGGGAATATATTTTACCCTTGTTCATTCTTAGTGCTGGATTCCCCCAACATGGAGTTTCTCTTCGGGCTGGATATGCTCCGAAAGCATCAGTGTATAATTGATTTAAAAGATAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCAGTGCCATTTTTGCAAGAGAAAGACATTCCATCTCGGTATTTAGACGAGGAGAAGTATTCCAAGGAAGCTTCAAGCTCTGGAGTCCCTCCCCCAGTTGTTACATCGGGGAGCAATAATTCATCACAAGGAGGCGCTTCTGGTGGTGACAGGTCTAAGGATTCTGAATTTGAAAGCAAAGTTGCAAAGCTTGTTGAGCTAGGATTCGAAAGACAAGCAGTTATACAAGCTCTTCAACTATTCAATGGCAATGAGGAACAAGCAGCTGGGTTTCTTTTTGGCTGA 1230 0.4301 MKITVMTADEQILNLDVDPNESVENVKALLEVETSVPIQQQQILFNGNEVNNSQKLSAIGVKDDDLLMMTVSRAGAGAGASSGSANDLSFNTDGSAINPGAFQQHFRRDSNLMGQLFQNDPELAQVILGNDLNKIQEILRLRHRQRDQLRRQKEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEGFARVVMLYVDMEVNGVPMKAFVDSGAQSTIISKTCAERLGLLRLLDQRYKGVAHGVGQTEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLQEKDIPSRYLDEEKYSKEASSSGVPPPVVTSGSNNSSQGGASGGDRSKDSEFESKVAKLVELGFERQAVIQALQLFNGNEEQAAGFLFG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05207 409 CDD Ubl_Ddi1_like 1 71 IPR033882 -
Vivi3g05207 409 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 409 IPR015940 -
Vivi3g05207 409 CDD RP_DDI 187 310 IPR019103 GO:0004190|GO:0006508
Vivi3g05207 409 MobiDBLite consensus disorder prediction 336 370 - -
Vivi3g05207 409 MobiDBLite consensus disorder prediction 343 364 - -
Vivi3g05207 409 FunFam DNA damage inducible 1 homolog 2 180 327 - -
Vivi3g05207 409 Pfam UBA/TS-N domain 373 406 IPR015940 -
Vivi3g05207 409 SUPERFAMILY Acid proteases 187 303 IPR021109 -
Vivi3g05207 409 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Vivi3g05207 409 Gene3D Acid Proteases 181 327 IPR021109 -
Vivi3g05207 409 Gene3D - 339 409 - -
Vivi3g05207 409 SMART ubq_7 1 72 IPR000626 GO:0005515
Vivi3g05207 409 Gene3D - 1 84 - -
Vivi3g05207 409 Coils Coil 135 155 - -
Vivi3g05207 409 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 407 - -
Vivi3g05207 409 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Vivi3g05207 409 SUPERFAMILY UBA-like 365 409 IPR009060 GO:0005515
Vivi3g05207 409 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vivi3g05207 409 CDD UBA_scDdi1_like 373 408 - -
Vivi3g05207 409 SMART uba_6 372 409 IPR015940 -
Vivi3g05207 409 Pfam Aspartyl protease 180 302 IPR019103 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05207 Vivi-Chr3 104711280 104714891 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05207 K11885 - gmx:100779464 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05207 3 104711280 104714891 Vivi3g05207 3 104711280 104714891 ECH