Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05127 ATGGAAGAAAAATTCTCATTCAAGAATCTTCATAGCAGAGAGTATTCCGGTCACAAGAAAAAGGTGCACTCCGTGGCTTGGAATTGCATTGGCACAAAACTTGCTTCTGGTTCTGTTGATCAAACTGCTCGAATCTGGCATATTGAACCACATCATGGCCATGGTAAGGTCAAAGATATTGAATTGAAGGGTCACACTGATAGTGTGGATCAGCTATGCTGGGATCCCAAACATCCTGATCTTATTGCAACTGCGTCGGGTGACAAGACTGTTCGTCTCTGGGATGCTCGTAGTGGAAAATGCTCACAACAAGCAGAACTTAGCGGGGAGAACATCAACATCACTTACAAACCTGATGGTACTCATGTAGCAGTAGGTAATAGGGATGATGAATTAACAATACTTGATGTTCGGAAGTTCAAACCAATTCATAGGCGCAAGTTCAACTATGAGGTAAATGAGATTGCTTGGAACATGACTGGCGAGATGTTTTTTTTAACAACGGGAAATGGGACCGTGGAAGTATTGTCTTATCCATCTCTTCGACCCCTCGATACCCTCATGGCTCATACAGCTGGTTGTTATTGCATTGCAATTGACCCAACAGGAAGACATTTCGCTGTTGGAAGTGCTGATTCCCTTGTCAGCTTATGGGTTATCTCGGAGATGCTTTGTGTGCGTACCTTTACAAAGCTCGAATGGCCTGTCCGTACGATTAGTTTCAATCATACCGGGGACTTGATTGCTTCGGCTAGTGAAGATTTGTTCATCGATATCTCAAATGTTCATACCGGAAAAACAGTACATCATATTCCTTGTAGAGCTGCCATGAATAGCGTTGAGTGGAATCCTAAATACAATGTACTTGCATATGCCGGAGATGACAAAAACAAGTATCAGGCCGATGAAGGTGTTTTTCGAATTTTTGGTTTTGAAAATGCTTAG 945 0.4254 MEEKFSFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHHGHGKVKDIELKGHTDSVDQLCWDPKHPDLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPTGRHFAVGSADSLVSLWVISEMLCVRTFTKLEWPVRTISFNHTGDLIASASEDLFIDISNVHTGKTVHHIPCRAAMNSVEWNPKYNVLAYAGDDKNKYQADEGVFRIFGFENA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05127 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Vivi3g05127 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 49 IPR001680 GO:0005515
Vivi3g05127 314 Gene3D - 57 150 IPR015943 GO:0005515
Vivi3g05127 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 104 IPR001680 GO:0005515
Vivi3g05127 314 PANTHER THO COMPLEX SUBUNIT 3 THO3 4 311 IPR040132 GO:0006406
Vivi3g05127 314 FunFam THO complex subunit 3 1 166 - -
Vivi3g05127 314 Gene3D - 8 56 IPR015943 GO:0005515
Vivi3g05127 314 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 100 - -
Vivi3g05127 314 PRINTS G protein beta WD-40 repeat signature 82 96 IPR020472 -
Vivi3g05127 314 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Vivi3g05127 314 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Vivi3g05127 314 SUPERFAMILY WD40 repeat-like 11 296 IPR036322 GO:0005515
Vivi3g05127 314 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 218 - -
Vivi3g05127 314 Pfam WD domain, G-beta repeat 183 218 IPR001680 GO:0005515
Vivi3g05127 314 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Vivi3g05127 314 Pfam WD domain, G-beta repeat 61 95 IPR001680 GO:0005515
Vivi3g05127 314 FunFam THO complex subunit 3 176 310 - -
Vivi3g05127 314 ProSitePatterns Trp-Asp (WD) repeats signature. 82 96 IPR019775 -
Vivi3g05127 314 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 49 - -
Vivi3g05127 314 Pfam Anaphase-promoting complex subunit 4 WD40 domain 233 283 IPR024977 -
Vivi3g05127 314 SMART WD40_4 222 261 IPR001680 GO:0005515
Vivi3g05127 314 SMART WD40_4 264 302 IPR001680 GO:0005515
Vivi3g05127 314 SMART WD40_4 55 95 IPR001680 GO:0005515
Vivi3g05127 314 SMART WD40_4 180 219 IPR001680 GO:0005515
Vivi3g05127 314 SMART WD40_4 8 47 IPR001680 GO:0005515
Vivi3g05127 314 SMART WD40_4 139 177 IPR001680 GO:0005515
Vivi3g05127 314 Gene3D - 151 310 IPR015943 GO:0005515
Vivi3g05127 314 CDD WD40 11 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05127 Vivi-Chr3 101535717 101539575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05127 152 310 Miscellaneous Gene Families AT5G08390 22.500 7.35e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05127 K12880 - gmx:100812126 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05127 3 101535717 101539575 Vivi3g05127 3 101535717 101539575 ECH