Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04579 ATGCTGAAGTCAGCATTCACCCCCATTTACTGGGTGCTATCACCCAAACCAAAATCACCTAAACTATCATCACGCTTAATCACCAACACCTTTTCAAACAGCACACCACATGTTCGACTAAATTCCTCAACCAAACACAACCCCGCCATCACCCCTTCTTCAGCCTATATTCACCTTCCTTTCTGTAGAAAACGTTGCCATTACTGTGACTTCCCCATTGTCGCCCTTGGCTCCGCTTCAACCCAAACACACGAAGACCCGCGTGTTGTTAACTACATTCAATGGCTCTGCAGAGAAATCACCGCAACCAAAGTAGAAGAAAAAATCGATTCCGAGACCGAGACGCCCCTTCAAACCGTCTTTTTTGGAGGTGGGACACCCTCTTTGGTTCCTCCAAGTATGGTTTCCTCGGTTTTGGATACACTGAGGACGAAATTTGGGTTGAGTGAAAGTGCTGAAATTTCAATGGAAATGGACCCGGGGACATTTGATTATAAGAAGATGCAAGAGATGATGTTGTTGGGAGTGAACAGAGTTTCTTTGGGAGTTCAAGCATTTCAGGAGAAGCTTTTGAAGAGTTGTGGCAGGGCACATGGTTTGGAAGAGGTTCACGAGGCTATTGATATTGTCAAAAAATGTGGGGTTGAGAATTGGAGTATTGATCTTATTGCTTCACTGCCTCATCAGACTAGTGACATGTGGGAGGAAAGTCTGAGACTCACCATTGAGGCACAGCCTACTCATGTTTCTGTTTATGATTTGCAAATTGAACAAGGCACAAAATTTGGAAGATTGTATGCACCAGGGGAATTTCCGCTGCCTTCTGAGACACAATCAGCTGATTTCTATAAGATGGCTTCAAGGATGCTTGGTGATGCAAGTTATAACCATTACGAAATCAGCAGCTACTGTAAGAATGGGTATGAATGCAGACACAACTTTACCTATTGGAAGAACAAGCCTTTCTATGCCTTTGGCCTTGGCTCTACTAGTTTTGTTGGTGGCTTAAGGTTTGCAAGACCCAGGAAGTTGAACGAGTACATGAAATTTGTGGAAAATCTGGAAAATGGATCAGTAAATAGCTCATCTGATGAAAACATTAATACCAAGGACACTGCCCTGGATGTTGTGATGCTGTCCCTGAGAACTGCAAGAGGTCTAGATTTGAAGCGTTTCCAAGAATCATTTGGAAGCTCTCTGGTTTATTCTCTATTTGGGGTTTATAAACCTTATGTTGAGAGTGGACACATGATTTTCTTGGACGAGCAAAGGAGAGCCATTAGTATAGAGGACATCAACCATTCTCTTTTGTATGATATTAACTCAGAAAGGAGAGTGGCCTATATGAGACTAAGTGATCCAAATGGCTTCCTTTTATCAAACGAGTTAATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAAGGATTATCCTTCTGCGCTACAAGAAGATACATGA 1458 0.4273 MLKSAFTPIYWVLSPKPKSPKLSSRLITNTFSNSTPHVRLNSSTKHNPAITPSSAYIHLPFCRKRCHYCDFPIVALGSASTQTHEDPRVVNYIQWLCREITATKVEEKIDSETETPLQTVFFGGGTPSLVPPSMVSSVLDTLRTKFGLSESAEISMEMDPGTFDYKKMQEMMLLGVNRVSLGVQAFQEKLLKSCGRAHGLEEVHEAIDIVKKCGVENWSIDLIASLPHQTSDMWEESLRLTIEAQPTHVSVYDLQIEQGTKFGRLYAPGEFPLPSETQSADFYKMASRMLGDASYNHYEISSYCKNGYECRHNFTYWKNKPFYAFGLGSTSFVGGLRFARPRKLNEYMKFVENLENGSVNSSSDENINTKDTALDVVMLSLRTARGLDLKRFQESFGSSLVYSLFGVYKPYVESGHMIFLDEQRRAISIEDINHSLLYDINSERRVAYMRLSDPNGFLLSNELIALAFGVIDSWKDYPSALQEDT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04579 485 ProSiteProfiles Radical SAM core domain profile. 47 293 IPR007197 GO:0003824|GO:0051536
Vivi3g04579 485 SMART MiaB 52 285 IPR006638 GO:0003824|GO:0051536
Vivi3g04579 485 SUPERFAMILY Radical SAM enzymes 48 421 - -
Vivi3g04579 485 PANTHER COPROPORPHYRINIGEN III OXIDASE 34 473 IPR034505 -
Vivi3g04579 485 Pfam Radical SAM superfamily 57 240 IPR007197 GO:0003824|GO:0051536
Vivi3g04579 485 SFLD HemN-like, clustered with heat shock genes 52 418 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vivi3g04579 485 CDD Radical_SAM 62 276 - -
Vivi3g04579 485 NCBIfam radical SAM family heme chaperone HemW 54 409 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vivi3g04579 485 Gene3D tm_1862 like domain 60 278 IPR023404 -
Vivi3g04579 485 SFLD anaerobic coproporphyrinogen-III oxidase like 52 418 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04579 - - gmx:100779022 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04579 3 82953057 82955573 Vivi3g04579 3 82953057 82955573 ECH